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BaseInfo

ncRNA ID	osa-miR5833
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:9341240-9341299 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	31 - UCCUCCUCGGGCUCAUCGGGC - 51
Stem-loop(if miRNA)	AU      C       CAUC     UCCUCU  CUCCUC UCGGGCU    GGGCU ||||||  |||||| |||||||    ||||C AGGAGG  GAGGGG GGCCCGA    UCCGA       --      U       -AAC
Stem-loop sequence	UCCUCUAUCUCCUCCUCGGGCUCAUCGGGCUCAGCCUCAAAGCCCGGUGGGGAGGGAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015777280.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   *|||||*|||=|||||||||| targets:422   CCCCGACGAGUCCGAGGAGGA   442 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333169 (LOC4333169), mRNA	uncharacterized LOC4333169(LOC4333169)	coding protein	psRNATarget
XM_015771742.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   |*|||=|||||*||||||||| targets:284   GGCCGGUGAGCGCGAGGAGGA   304 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UBP1-associated protein 2B (LOC4329903), mRNA	UBP1-associated protein 2B(LOC4329903)	coding protein	psRNATarget
XM_015789748.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   ||=|**||||||||||||||| targets:230   GCUCCCUGAGCCCGAGGAGGA   250 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873 (LOC4342830), mRNA	putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873(LOC4342830)	coding protein	psRNATarget
AK068864.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   ||=|**||||||||||||||| targets:207   GCUCCCUGAGCCCGAGGAGGA   227 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013170O10, full insert sequence	NA	coding protein	psRNATarget
AK109966.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   *|=|||*|||||||||||||* targets:3386   UCUCGACGAGCCCGAGGAGGC   3406 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-159-C01, full insert sequence	NA	coding protein	psRNATarget
XM_015781828.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   ||*|||*|||||||||||||* targets:526   GCGCGACGAGCCCGAGGAGGC   546 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339239 (LOC4339239), mRNA	uncharacterized LOC4339239(LOC4339239)	coding protein	psRNATarget
AK060312.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   ||*|||*|||||||||||||* targets:480   GCGCGACGAGCCCGAGGAGGC   500 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-007-C02, full insert sequence	NA	coding protein	psRNATarget
AK111169.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   |=|*|=*|||||||||||||| targets:2538   GUCGGGCGAGCCCGAGGAGGA   2558 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-177-C12, full insert sequence	NA	coding protein	psRNATarget
XM_015782193.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   *=||||*|||||*|||||||| targets:1994   CUCCGACGAGCCGGAGGAGGA   2014 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group interactor of constitutive active ROPs 2, chloroplastic (LOC4337660), transcript variant X6, mRNA	interactor of constitutive active ROPs 2, chloroplastic(LOC4337660)	coding protein	psRNATarget
XM_015782187.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   *=||||*|||||*|||||||| targets:1941   CUCCGACGAGCCGGAGGAGGA   1961 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group interactor of constitutive active ROPs 2, chloroplastic (LOC4337660), transcript variant X1, mRNA	interactor of constitutive active ROPs 2, chloroplastic(LOC4337660)	coding protein	psRNATarget
XM_015782190.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   *=||||*|||||*|||||||| targets:1938   CUCCGACGAGCCGGAGGAGGA   1958 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group interactor of constitutive active ROPs 2, chloroplastic (LOC4337660), transcript variant X4, mRNA	interactor of constitutive active ROPs 2, chloroplastic(LOC4337660)	coding protein	psRNATarget
XM_015782188.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   *=||||*|||||*|||||||| targets:1936   CUCCGACGAGCCGGAGGAGGA   1956 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group interactor of constitutive active ROPs 2, chloroplastic (LOC4337660), transcript variant X2, mRNA	interactor of constitutive active ROPs 2, chloroplastic(LOC4337660)	coding protein	psRNATarget
XM_015782189.1	ncRNA:21   CGGGCUACUCGGGCUCCUCCU   1   *=||||*|||||*|||||||| targets:1883   CUCCGACGAGCCGGAGGAGGA   1903 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group interactor of constitutive active ROPs 2, chloroplastic (LOC4337660), transcript variant X3, mRNA	interactor of constitutive active ROPs 2, chloroplastic(LOC4337660)	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).