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BaseInfo

ncRNA ID	novel_zma_miR1544
Species	Zea mays
Class	miRNA
Genome position	Chr3:124545248-124545370 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR1583941;SRR1583942
Length	21
Mature sequence(if miRNA)	103 - UGAAGGACCUAGAUGAUUACU - 123
Stem-loop(if miRNA)	--           A        C        C        G  ---   UCAC  U       A   UGAUCAUCUGG UCCUUCAA UUUUCAAG GGUUCAUU CA   UGU    UC AGGUCCA U   ||||||||||| |||||||| |||||||| |||||||| ||   |||    || |||||||   AUUAGUAGAUC AGGAAGUU AAAAGUUC CUAAGUAA GU   ACA    AG UUCAGGU C UC           C        A        A        -  UUC   UUUA  -       A
Stem-loop sequence	UGAUCAUCUGGAUCCUUCAACUUUUCAAGCGGUUCAUUGCAUGUUCACUCUAGGUCCAAUCAUGGACUUGAAUUUACACUUUGAAUGAAUCACUUGAAAAAUUGAAGGACCUAGAUGAUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008653499.2	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1564   UGGAAGCAUCUAGGUCCUUCU   1584 Target Full Sequence	3.0	PREDICTED: Zea mays putative transcriptional regulator SLK2 (LOC100383356), transcript variant X6, mRNA	NA	coding protein	psRNATarget
NM_001176012.1	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1722   UGGAAGCAUCUAGGUCCUUCU   1742 Target Full Sequence	3.0	Zea mays putative transcriptional regulator SLK2 (LOC100383356), mRNA	NA	coding protein	psRNATarget
BT061458.1	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1722   UGGAAGCAUCUAGGUCCUUCU   1742 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0148G04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653497.2	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1729   UGGAAGCAUCUAGGUCCUUCU   1749 Target Full Sequence	3.0	PREDICTED: Zea mays putative transcriptional regulator SLK2 (LOC100383356), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008653498.2	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1755   UGGAAGCAUCUAGGUCCUUCU   1775 Target Full Sequence	3.0	PREDICTED: Zea mays putative transcriptional regulator SLK2 (LOC100383356), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020540652.1	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1786   UGGAAGCAUCUAGGUCCUUCU   1806 Target Full Sequence	3.0	PREDICTED: Zea mays putative transcriptional regulator SLK2 (LOC100383356), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008653496.2	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1823   UGGAAGCAUCUAGGUCCUUCU   1843 Target Full Sequence	3.0	PREDICTED: Zea mays putative transcriptional regulator SLK2 (LOC100383356), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008653495.2	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:1907   UGGAAGCAUCUAGGUCCUUCU   1927 Target Full Sequence	3.0	PREDICTED: Zea mays putative transcriptional regulator SLK2 (LOC100383356), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066983.1	ncRNA:21   UCAUUAGUAGAUCCAGGAAGU   1   *|*||*||||||||||||||* targets:3277   UGGAAGCAUCUAGGUCCUUCU   3297 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0133P07 mRNA, complete cds	NA	coding protein	psRNATarget