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BaseInfo

ncRNA ID	novel_zma_miR1541
Species	Zea mays
Class	miRNA
Genome position	Chr2:150220899-150221023 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089713;SRR2089715;SRR2089700
Length	21
Mature sequence(if miRNA)	1 - AAAGCGACUUAUAAUUUGGAA - 21
Stem-loop(if miRNA)	--                       C    AG       AUCC   UU   A         A   CCAGAUUAUAAGUCGCUUUGGUU UUUU  UACAUAG    UUU  UGU UCUAGAUAU U   ||||||||||||||||||||||| ||||  |||||||    |||  ||| ||||||||| G   GGUUUAAUAUUCAGCGAAACUAA AAAA  AUGUAUU    AAG  ACA AGAUUUAUA U AA                       A    CA       AAAA   GU   C         C
Stem-loop sequence	CCAGAUUAUAAGUCGCUUUGGUUCUUUUAGUACAUAGAUCCUUUUUUGUAUCUAGAUAUAUGUCAUAUUUAGACACAUGGAAAAAAUUAUGUAACAAAAAAAUCAAAGCGACUUAUAAUUUGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU953922.1	ncRNA:21   AAGGUUUAAUAUUCAGCGAAA   1   |||||=||||||||||||||| targets:1186   UUCCAGAUUAUAAGUCGCUUU   1206 Target Full Sequence	1.0	Zea mays clone 1449618 mRNA sequence	NA	coding protein	psRNATarget
BT043140.1	ncRNA:21   AAGGUUUAAUAUUCAGCGAAA   1   ||||||||||||||||*|||| targets:1527   UUCCAAAUUAUAAGUCACUUU   1547 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0108F17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165451.1	ncRNA:21   AAGGUUUAAUAUUCAGCGAAA   1   ||||||||||||||||*|||| targets:1527   UUCCAAAUUAUAAGUCACUUU   1547 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275548 (LOC100275548), mRNA	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:21   AAGGUUUAAUAUUCAGCGAAA   1   |||=||||||||||*|||||| targets:3624   UUCUAAAUUAUAAGACGCUUU   3644 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget
BT017823.1	ncRNA:21   AAGGUUUAAUAUUCAGCGAAA   1   |||=||||||||||*|||||| targets:996   UUCUAAAUUAUAAGACGCUUU   1016 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget