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BaseInfo

ncRNA ID	novel_zma_miR1540
Species	Zea mays
Class	miRNA
Genome position	Chr10:102226025-102226155 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	108 - CCGGACUGUCCGGUGUACCACCGA - 131
Stem-loop(if miRNA)	--      U         AC     A   G         CCCCAG  GA     --AC      -  C   CCGGAC GUCCGGUGU  CACCG ACA UGUCCGGUG      AG  GAGCG    UCUGAA CU G   |||||| |||||||||  ||||| ||| |||||||||      ||  |||||    |||||| ||   GGCCUG CAGGCCACA  GUGGC UGU ACAGGCCAC      UC  CUCGC    AGGCUU GA C GU      U         -C     C   -         UUAAUA  GC     CUUU      C  C
Stem-loop sequence	CCGGACUGUCCGGUGUACCACCGAACAGUGUCCGGUGCCCCAGAGGAGAGCGACUCUGAACUCGCCAGCUUCGGAUUUCCGCUCCGCUAUAAUUCACCGGACAUGUCCGGUGCACACCGGACUGUCCGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410113.1	ncRNA:24   AGC-CACCAUGUGGCCUGUCAGGCC   1   |||-|||||=||||||||||||||| targets:145   UCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	1.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   AGC-CACCAUGUGGCCUGUCAGGCC   1   |||-|||||=||||||||||||||| targets:145   UCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	1.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   AGC-CACCAUGUGGCCUGUCAGGCC   1   |||-|||||=||||||||||||||| targets:145   UCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	1.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
BT054171.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   ||||||||=||||||||*|||||| targets:1558   UCGGUGGUGCACCGGACUGUCCGG   1581 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152406.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   ||||||||=||||||||*|||||| targets:1558   UCGGUGGUGCACCGGACUGUCCGG   1581 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AGC-CACCAUGUGGCCUGUCAGGCC   1   |||-|||||=||||||||||||=|| targets:403   UCGAGUGGUGCACCGGACAGUCUGG   427 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   ****||||=||||||||||||||| targets:827   AGCCUGGUGCACCGGACAGUCCGG   850 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||||||*|||||||||||||||| targets:93   CCGGUGGCACACCGGACAGUCCGG   116 Target Full Sequence	1.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||||||*|||||||||||||||| targets:796   CCGGUGGCACACCGGACAGUCCGG   819 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*|||*|||||||||||||||| targets:694   CCGCUGGCACACCGGACAGUCCGG   717 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-|||*=||||||||||||||| targets:471   UCGCAUGGCGCACCGGACAGUCCGG   495 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   AGCC------ACCAUGUGGCCUGUCAGGCC   1   ||||------||||=||||||||||||||| targets:84   UCGGGUUCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	1.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|**|||*|||||||||||||||| targets:9   CCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	1.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   AGCC------ACCAUGUGGCCUGUCAGGCC   1   ||||------||||=||||||||||||||| targets:84   UCGGGUUCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	1.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|**|||*|||||||||||||||| targets:9   CCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	1.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   AGCC------ACCAUGUGGCCUGUCAGGCC   1   ||||------||||=||||||||||||||| targets:84   UCGGGUUCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	1.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|**|||*|||||||||||||||| targets:9   CCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	1.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
BT037301.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:978   CCGGUGGUGCACCGGACUGUCCGG   1001 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001309905.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:1150   CCGGUGGUGCACCGGACUGUCCGG   1173 Target Full Sequence	2.5	Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA	NA	coding protein	psRNATarget
EU960150.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:1320   CCGGUGGUGCACCGGACUGUCCGG   1343 Target Full Sequence	2.5	Zea mays clone 222169 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064005.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:1409   CCGGUGGUGCACCGGACUGUCCGG   1432 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175099.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:1409   CCGGUGGUGCACCGGACUGUCCGG   1432 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA	NA	coding protein	psRNATarget
EZ071967.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:47   CCGGUGGUGCACCGGACUGUCCGG   70 Target Full Sequence	2.5	TSA: Zea mays contig07604, mRNA sequence	NA	coding protein	psRNATarget
EZ105730.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:59   CCGGUGGUGCACCGGACUGUCCGG   82 Target Full Sequence	2.5	TSA: Zea mays contig41388, mRNA sequence	NA	coding protein	psRNATarget
JB170455.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:108   CCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	2.5	Sequence 8119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242124.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:108   CCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	2.5	Sequence 8119 from Patent EP2985353	NA	coding protein	psRNATarget
HI409994.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:108   CCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	2.5	Sequence 8119 from Patent EP2074227	NA	coding protein	psRNATarget
EZ109324.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:33   CCGGUGGUGCACCGGACUGUCCGG   56 Target Full Sequence	2.5	TSA: Zea mays contig44983, mRNA sequence	NA	coding protein	psRNATarget
EU962912.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:420   CCGGUGGUGCACCGGACUGUCCGG   443 Target Full Sequence	2.5	Zea mays clone 246496 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*||||=||||||||||||||| targets:820   CCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AGCCACC-AUGUGGCCUGUCAGGCC   1   *||*|||-|=||||||||||||||| targets:585   GCGAUGGGUGCACCGGACAGUCCGG   609 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*||||=||||||||||||||| targets:820   CCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	1.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AGCCACC-AUGUGGCCUGUCAGGCC   1   *||*|||-|=||||||||||||||| targets:585   GCGAUGGGUGCACCGGACAGUCCGG   609 Target Full Sequence	3.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT065862.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:1288   CCGGUGGUGCACCGGACUGUCCGG   1311 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175661.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||*|||||| targets:1288   CCGGUGGUGCACCGGACUGUCCGG   1311 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AGC-CACCAUGUGGCCUGUCAGGCC   1   |||-||||*=||||||||||||||| targets:487   UCGAGUGGCGCACCGGACAGUCCGG   511 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   ****|||*=||||||||||||||| targets:777   AGCCUGGCGCACCGGACAGUCCGG   800 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AGC-CACCAUGUGGCCUGUCAGGCC   1   |||-||||*=||||||||||||||| targets:487   UCGAGUGGCGCACCGGACAGUCCGG   511 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   ****|||*=||||||||||||||| targets:777   AGCCUGGCGCACCGGACAGUCCGG   800 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
EU943461.1	ncRNA:24   AG-CCACCAUGUGGCCUGUCAGGCC   1   ||-||||||=||||||||*|||||| targets:1393   UCUGGUGGUGCACCGGACUGUCCGG   1417 Target Full Sequence	2.5	Zea mays clone 1624403 mRNA sequence	NA	coding protein	psRNATarget
EU943181.1	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   ||||-||||=||||||||*|||||| targets:928   UCGGGUGGUGCACCGGACUGUCCGG   952 Target Full Sequence	2.5	Zea mays clone 1580698 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   ||||-|||*=||||||||||||||| targets:176   UCGGGUGGAGCACCGGACAGUCCGG   200 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||*|*||||||||||||||| targets:679   CCGGUGCUUCACCGGACAGUCCGG   702 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*|||*|||||||||||||||| targets:721   CCGUUGGCACACCGGACAGUCCGG   744 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   ||*|**|*|||||||||||||||| targets:740   UCCGGUGCACACCGGACAGUCCGG   763 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:352   CCGGUGCCUCACCGGACAGUCCGG   375 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*||***||||||||||||||| targets:1026   CCGAUGCGCCACCGGACAGUCCGG   1049 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
JB170118.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||||||*||||||||||*||||| targets:33   CCGGUGGCACACCGGACAAUCCGG   56 Target Full Sequence	2.5	Sequence 7782 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241787.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||||||*||||||||||*||||| targets:33   CCGGUGGCACACCGGACAAUCCGG   56 Target Full Sequence	2.5	Sequence 7782 from Patent EP2985353	NA	coding protein	psRNATarget
HI409657.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||||||*||||||||||*||||| targets:33   CCGGUGGCACACCGGACAAUCCGG   56 Target Full Sequence	2.5	Sequence 7782 from Patent EP2074227	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|*||||*|||||||||||||||| targets:1378   CCCGUGGCACACCGGACAGUCCGG   1401 Target Full Sequence	1.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   ||*|**|*|||||||||||||||| targets:1397   UCCGGUGCACACCGGACAGUCCGG   1420 Target Full Sequence	2.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   |=|*|||*=||||||||||||||| targets:172   UUGAUGGCGCACCGGACAGUCCGG   195 Target Full Sequence	2.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   AG-CCACCAUGUGGCCUGUCAGGCC   1   ||-|||||**||||||||||||||| targets:27   UCUGGUGGCCCACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   AG-CCACCAUGUGGCCUGUCAGGCC   1   ||-|||||**||||||||||||||| targets:27   UCUGGUGGCCCACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   AG-CCACCAUGUGGCCUGUCAGGCC   1   ||-|||||**||||||||||||||| targets:27   UCUGGUGGCCCACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-|||*=||||||||||||||| targets:372   UCGUCUGGCGCACCGGACAGUCCGG   396 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:723   CCGGUGCACCACCGGACAGUCCGG   746 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*|||*=||||||||||||||| targets:598   ACGUUGGCGCACCGGACAGUCCGG   621 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-|||*=||||||||||||||| targets:501   UCGCCUGGCGCACCGGACAGUCCGG   525 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*|||*=||||||||||||||| targets:598   ACGUUGGCGCACCGGACAGUCCGG   621 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-|||*=||||||||||||||| targets:501   UCGCCUGGCGCACCGGACAGUCCGG   525 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:799   CCGGUGCACCACCGGACAGUCCGG   822 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:799   CCGGUGCACCACCGGACAGUCCGG   822 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:662   CCGGUGCACCACCGGACAGUCCGG   685 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:662   CCGGUGCACCACCGGACAGUCCGG   685 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:4710   CCGGUGCACCACCGGACAGUCCGG   4733 Target Full Sequence	3.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-|||*=||||||||||||||| targets:87   UCGCAUGGCGCACCGGACAGUCCGG   111 Target Full Sequence	2.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-||||=||||*|||||||||| targets:493   UCGCCUGGUGCACCUGACAGUCCGG   517 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *=|*|||**||||||||||||||| targets:686   CUGUUGGCUCACCGGACAGUCCGG   709 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-||||=||||*|||||||||| targets:493   UCGCCUGGUGCACCUGACAGUCCGG   517 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *=|*|||**||||||||||||||| targets:686   CUGUUGGCUCACCGGACAGUCCGG   709 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   AGCC-ACCAUGUGGCCUGUCAGGCC   1   |||*-|||*=||||||||||||||| targets:2536   UCGACUGGCGCACCGGACAGUCCGG   2560 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
BT016820.1	ncRNA:24   AGC-CACCAUGUGGCCUGUCAGGCC   1   *||-|*||||||||||||*|||||| targets:3   ACGAGGGGUACACCGGACUGUCCGG   27 Target Full Sequence	1.5	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *||*|||**||||||||||||||| targets:704   CCGUUGGCUCACCGGACAGUCCGG   727 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:849   CCGGUGCACCACCGGACAGUCCGG   872 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
HI408938.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
JB169399.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
JB170644.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
HI409038.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
JB169499.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
HI410183.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
HI409440.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
JB169901.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:24   AGCCACCAUGUGGCCUGUCAGGCC   1   *|||||***||||||||||||||| targets:29   CCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:20   ACCAUGUGGCCUGUCAGGCC   1   |||*=||||||||||||||| targets:1   UGGCGCACCGGACAGUCCGG   20 Target Full Sequence	2.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget