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BaseInfo

ncRNA ID osa-miR1425-3p
Species Oryza sativa
Class miRNA
Genome position Chr5:8862149-8862250 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 71 - CAGCAAGAACUGGAUCUUAAU - 91
Stem-loop(if miRNA)           C           AUC         -  --A         UA
CUGUUGACUG AUUAGGAUUCA   CUUGCUGCU AA   UGUAUUGCU  U
|||||||||| |||||||||||   ||||||||| ||   |||||||||  A
GAUAGCUGAU UAAUUCUAGGU   GAACGACGA UU   AUAUAACGA  U
          A           CAA         C  GUA         CU
Stem-loop sequence CUGUUGACUGCAUUAGGAUUCAAUCCUUGCUGCUAAAUGUAUUGCUUAUAUUCAGCAAUAUAAUGUUCAGCAGCAAGAACUGGAUCUUAAUAUAGUCGAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF576306.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:173   AAUAAAAUCCAGCUCUUGCUG   193

2.5 Oryza sativa (indica cultivar-group) clone OSR-385-428-A9 unknown mRNA NA coding protein psRNATarget
BT132050.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:262   AAUAAAAUCCAGCUCUUGCUG   282

2.5 Oryza sativa clone RRlibD00946 mRNA sequence NA coding protein psRNATarget
BT130483.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:373   AAUAAAAUCCAGCUCUUGCUG   393

2.5 Oryza sativa clone RRlibB00115 mRNA sequence NA coding protein psRNATarget
BT130412.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:367   AAUAAAAUCCAGCUCUUGCUG   387

2.5 Oryza sativa clone RRlibB00762 mRNA sequence NA coding protein psRNATarget
BT130543.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:370   AAUAAAAUCCAGCUCUUGCUG   390

2.5 Oryza sativa clone RRlibC00687 mRNA sequence NA coding protein psRNATarget
BT129470.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:372   AAUAAAAUCCAGCUCUUGCUG   392

2.5 Oryza sativa clone RRlibB00276 mRNA sequence NA coding protein psRNATarget
BT129796.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:373   AAUAAAAUCCAGCUCUUGCUG   393

2.5 Oryza sativa clone RRlibB00653 mRNA sequence NA coding protein psRNATarget
BT131723.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:373   AAUAAAAUCCAGCUCUUGCUG   393

2.5 Oryza sativa clone RRlibB00459 mRNA sequence NA coding protein psRNATarget
BT130559.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:378   AAUAAAAUCCAGCUCUUGCUG   398

2.5 Oryza sativa clone RRlibB00418 mRNA sequence NA coding protein psRNATarget
BT130638.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:378   AAUAAAAUCCAGCUCUUGCUG   398

2.5 Oryza sativa clone RRlibB00609 mRNA sequence NA coding protein psRNATarget
BT131066.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:378   AAUAAAAUCCAGCUCUUGCUG   398

2.5 Oryza sativa clone RRlibB00131 mRNA sequence NA coding protein psRNATarget
BT129735.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:379   AAUAAAAUCCAGCUCUUGCUG   399

2.5 Oryza sativa clone RRlibB00544 mRNA sequence NA coding protein psRNATarget
BT129681.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:378   AAUAAAAUCCAGCUCUUGCUG   398

2.5 Oryza sativa clone RRlibC00525 mRNA sequence NA coding protein psRNATarget
BT132266.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:382   AAUAAAAUCCAGCUCUUGCUG   402

2.5 Oryza sativa clone RRlibC01291 mRNA sequence NA coding protein psRNATarget
BT131107.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:382   AAUAAAAUCCAGCUCUUGCUG   402

2.5 Oryza sativa clone RRlibC00559 mRNA sequence NA coding protein psRNATarget
BT129864.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:385   AAUAAAAUCCAGCUCUUGCUG   405

2.5 Oryza sativa clone RRlibC00625 mRNA sequence NA coding protein psRNATarget
AK063844.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:379   AAUAAAAUCCAGCUCUUGCUG   399

2.5 Oryza sativa Japonica Group cDNA clone:001-122-C04, full insert sequence NA coding protein psRNATarget
BT130181.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:373   AAUAAAAUCCAGCUCUUGCUG   393

2.5 Oryza sativa clone RRlibB00671 mRNA sequence NA coding protein psRNATarget
AK121801.1
ncRNA:21   UAAUUCUAGGUCAAGAACGAC   1
  |*|||*||||||*||||||||
targets:1604   AAUAAAAUCCAGCUCUUGCUG   1624

2.5 Oryza sativa Japonica Group cDNA clone:J033097G14, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).
3 PMID:19055717
"Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice";
Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M;
BMC Plant Biol. 8:123(2008).
4 PMID:21791435
"Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)";
Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q;
J Exp Bot. 62:4943-4954(2011).
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