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BaseInfo

ncRNA ID novel_zma_miR1539
Species Zea mays
Class miRNA
Genome position Chr2:169023749-169023931 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 160 - AAGGGGUGUUUGGUUUGUAGGGAC - 183
Stem-loop(if miRNA) --AA              G                               A        AUC C       CCAU    A           
    GGGGUGUUUGGUUU UAGGGACUAAUUUUUAGUCCCUCCAUUUUAU CUAUUUUA   C UAAAUUG    AUAC GAAACUAAAAUA
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||   | |||||||    |||| |||||||||||G
    CCCCACAAACCAAA AUCCCUGAUUAAAAAUCAGGGAGGUAAAAUA GGUAAAAU   G AUUUAAC    UAUG CUUUGAUUUUGA
AAUC              G                               A        CAA U       AUUU    C           
Stem-loop sequence AAGGGGUGUUUGGUUUGUAGGGACUAAUUUUUAGUCCCUCCAUUUUAUACUAUUUUAAUCCCUAAAUUGCCAUAUACAGAAACUAAAAUAGAGUUUUAGUUUCCGUAUUUUACAAUUUAUGAACUAAAAUGGAAUAAAAUGGAGGGACUAAAAAUUAGUCCCUAGAAACCAAACACCCCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ077632.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  ||||||||||||||||||||||||
targets:37   GUCCCUACAAACCAAACACCCCUU   60

0.0 TSA: Zea mays contig13271, mRNA sequence NA coding protein psRNATarget
NM_001151347.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||=||||||||||||||||
targets:52   GUCCCUAUAAACCAAACACCCCUU   75

1.0 Zea mays hypothetical protein (LOC100277899), mRNA NA coding protein psRNATarget
XM_008676281.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGG-AA   1
  ||||||||||||||||||||||-||
targets:44   GUCCCUACAAACCAAACACCCCCUU   68

3.0 PREDICTED: Zea mays U-box domain-containing protein 14 (LOC103650716), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  ||||||||||||||||||||||*|
targets:704   GUCCCUACAAACCAAACACCCCCU   727

1.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  ||||||||||||||||||||||*|
targets:1124   GUCCCUACAAACCAAACACCCCCU   1147

1.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||||
targets:1250   GUCCCUAGAAACCAAACACCCCUU   1273

1.0 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
EU967664.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||||
targets:1250   GUCCCUAGAAACCAAACACCCCUU   1273

1.0 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
XM_020546554.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||||
targets:40   GUCCCUAGAAACCAAACACCCCUU   63

1.0 PREDICTED: Zea mays uncharacterized LOC109943471 (LOC109943471), mRNA NA coding protein psRNATarget
XM_008656457.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  ||||||||||||||||||||||**
targets:1762   GUCCCUACAAACCAAACACCCCAA   1785

2.5 PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA NA coding protein psRNATarget
EU965238.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:1316   GUCCCUAGAAACCAAACACCCCYU   1339

2.5 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
NM_001156492.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:1316   GUCCCUAGAAACCAAACACCCCYU   1339

2.5 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
EZ068389.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:170   GUCCCUAAAAACCAAACACCCCAU   193

2.5 TSA: Zea mays contig04024, mRNA sequence NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:1071   GUCCCUAGAAACCAAACACCCCCU   1094

2.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
BT065747.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:916   GUCCCUAGAAACCAAACACCCCCU   939

2.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
XM_008674294.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:22   GUCCCUAAAAACCAAACACCCCCU   45

2.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674295.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:22   GUCCCUAAAAACCAAACACCCCCU   45

2.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:2086   GUCCCUAGAAACCAAACACCCCCU   2109

2.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
BT053999.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||||||*||||||||||||||*|
targets:2086   GUCCCUAGAAACCAAACACCCCCU   2109

2.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
XM_008657139.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  |||=*||*||||||||||||=|||
targets:4234   GUCUAUAGAAACCAAACACCUCUU   4257

2.5 PREDICTED: Zea mays ribosome biogenesis protein BMS1 homolog (LOC103634616), mRNA NA coding protein psRNATarget
BT088053.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  *|||=*|*|||||||||||||||*
targets:947   AUCCUCAGAAACCAAACACCCCUA   970

3.0 Zea mays full-length cDNA clone ZM_BFb0380J10 mRNA, complete cds NA coding protein psRNATarget
BT039671.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  *|||=*|*|||||||||||||||*
targets:1205   AUCCUCAGAAACCAAACACCCCUA   1228

3.0 Zea mays full-length cDNA clone ZM_BFc0037P09 mRNA, complete cds NA coding protein psRNATarget
EU962491.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  *|||=*|*|||||||||||||||*
targets:1265   AUCCUCAGAAACCAAACACCCCUA   1288

3.0 Zea mays clone 243115 mRNA sequence NA coding protein psRNATarget
BT087555.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  *|||=*|*|||||||||||||||*
targets:1319   AUCCUCAGAAACCAAACACCCCUA   1342

3.0 Zea mays full-length cDNA clone ZM_BFb0108F07 mRNA, complete cds NA coding protein psRNATarget
BT033446.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  *|||=*|*|||||||||||||||*
targets:1365   AUCCUCAGAAACCAAACACCCCUA   1388

3.0 Zea mays full-length cDNA clone ZM_BFb0157F18 mRNA, complete cds NA coding protein psRNATarget
NM_001136807.1
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  *|||=*|*|||||||||||||||*
targets:1365   AUCCUCAGAAACCAAACACCCCUA   1388

3.0 Zea mays Protein LIKE COV 2 (LOC100191373), mRNA NA coding protein psRNATarget
XM_008655999.2
ncRNA:24   CAGGGAUGUUUGGUUUGUGGGGAA   1
  *|||=*|*|||||||||||||||*
targets:1306   AUCCUCAGAAACCAAACACCCCUA   1329

3.0 PREDICTED: Zea mays Protein LIKE COV 2 (LOC100191373), transcript variant X1, mRNA NA coding protein psRNATarget
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