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BaseInfo

ncRNA ID novel_zma_miR1534
Species Zea mays
Class miRNA
Genome position Chr3:116673942-116674050 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - AUGGCGAUCUGCGUUACUUAGCGC - 24
Stem-loop(if miRNA) --    C    ---U     ACUUAGCGCUAUGUUUGUUUCCUUUGUGUGUUUGCG
  AUGG GAUC    GCGUU                                    U
  |||| ||||    |||||                                    G
  UACC UUAG    CACGA                                    U
CC    -    UUUG     AUCGCGUUUGCCACUACGGGGCAUCCCUUAUUUGGA
Stem-loop sequence AUGGCGAUCUGCGUUACUUAGCGCUAUGUUUGUUUCCUUUGUGUGUUUGCGUGUAGGUUUAUUCCCUACGGGGCAUCACCGUUUGCGCUAAGCACGUUUGAUUCCAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ073456.1
ncRNA:24   CGCGAUUCAUUGCGUCUAGCGGUA   1
  ||||||||||||||||||||||||
targets:66   GCGCUAAGUAACGCAGAUCGCCAU   89

0.0 TSA: Zea mays contig09093, mRNA sequence NA coding protein psRNATarget
EZ107072.1
ncRNA:24   CGCGAUUCAUUGCGUCUAGCGGUA   1
  |||||||*||||||||||||=|||
targets:144   GCGCUAAAUAACGCAGAUCGUCAU   167

2.5 TSA: Zea mays contig42730, mRNA sequence NA coding protein psRNATarget