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BaseInfo

ncRNA ID novel_zma_miR1531
Species Zea mays
Class miRNA
Genome position Chr2:15936792-15936882 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089712;SRR2287165;SRR5451005
Length 23
Mature sequence(if miRNA) 1 - CAUGUGGAUUGAGUGGGAUUAGA - 23
Stem-loop(if miRNA) --           AG      UA  UGUAUUU      CA  C   U
  CAUGUGGAUUG  UGGGAU  GA       GAAUUC  AA AAG C
  |||||||||||  ||||||  ||       ||||||  || ||| A
  GUGUACCUAAC  ACCCUA  CU       UUUAAG  UU UUC A
AU           CU      GC  ----UUU      AA  C   A
Stem-loop sequence CAUGUGGAUUGAGUGGGAUUAGAUGUAUUUGAAUUCCAAACAAGUCAAACUUCUUAAGAAUUUUUUUCCGAUCCCAUCCAAUCCAUGUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008674375.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |||||||=|||||||||||||||
targets:3440   UCUAAUCUCACUCAAUCCACAUG   3462

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||*|=||*|||||||||||||
targets:3514   UUUAUUUCCUCUCAAUCCACAUG   3536

3.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |||||||=|||||||||||||||
targets:3409   UCUAAUCUCACUCAAUCCACAUG   3431

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||*|=||*|||||||||||||
targets:3483   UUUAUUUCCUCUCAAUCCACAUG   3505

3.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |||||||=|||||||||||||||
targets:3396   UCUAAUCUCACUCAAUCCACAUG   3418

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||*|=||*|||||||||||||
targets:3470   UUUAUUUCCUCUCAAUCCACAUG   3492

3.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008669549.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |||||||||||||||||||=|||
targets:2084   UCUAAUCCCACUCAAUCCAUAUG   2106

1.5 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
BT042044.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |||||||||||||||||||=|||
targets:1367   UCUAAUCCCACUCAAUCCAUAUG   1389

1.5 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
EU960921.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||||||=||||||||||||||
targets:1252   UUUAAUCCUACUCAAUCCACAUG   1274

1.0 Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds NA coding protein psRNATarget
NM_001279564.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||||||=||||||||||||||
targets:1249   UUUAAUCCUACUCAAUCCACAUG   1271

1.0 Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA NA coding protein psRNATarget
EU968756.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||||||=||||||||||||||
targets:928   UUUAAUCCUACUCAAUCCACAUG   950

1.0 Zea mays clone 323940 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
AY112141.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |||||||=|||||||||=|||||
targets:230   UCUAAUCUCACUCAAUCUACAUG   252

2.5 Zea mays CL24213_1 mRNA sequence NA coding protein psRNATarget
XM_020545430.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:5806   UCCAAUCCCACUCAAUCCACAUG   5828

0.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1231   UCCAAUCCCACUCAAUCCACAUG   1253

0.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1201   UCCAAUCCCACUCAAUCCACAUG   1223

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1201   UCCAAUCCCACUCAAUCCACAUG   1223

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1083   UCCAAUCCCACUCAAUCCACAUG   1105

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1960   UCCAAUCCCACUCAAUCCACAUG   1982

0.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1960   UCCAAUCCCACUCAAUCCACAUG   1982

0.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:2502   UCCAAUCCCACUCAAUCCACAUG   2524

0.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:2213   UCCAAUCCCACUCAAUCCACAUG   2235

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
NM_001154031.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1817   UCCAAUCCCACUCAAUCCACAUG   1839

0.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1817   UCCAAUCCCACUCAAUCCACAUG   1839

0.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1532   UCCAAUCCCACUCAAUCCACAUG   1554

0.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:1532   UCCAAUCCCACUCAAUCCACAUG   1554

0.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
BT066441.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |||||||||||*|||||||||||
targets:1529   UCUAAUCCCACCCAAUCCACAUG   1551

1.5 Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:530   UCCAAUCCCACUCAAUCCACAUG   552

0.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:178   UCCAAUCCCACUCAAUCCACAUG   200

0.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:876   UCCAAUCCCACUCAAUCCACAUG   898

0.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:747   UCCAAUCCCACUCAAUCCACAUG   769

0.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
EZ064016.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:122   UCCAAUCCCACUCAAUCCACAUG   144

0.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
LQ235220.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
JB163551.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
HI403094.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUG   113

0.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUG   113

0.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUG   113

0.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUG   104

0.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUG   104

0.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUG   104

0.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238019.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUG   103

0.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUG   103

0.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUG   103

0.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
XM_020542399.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||||||=||||||||||
targets:7262   UCCAAUCCCACUUAAUCCACAUG   7284

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008657578.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||||||=||||||||||
targets:7251   UCCAAUCCCACUUAAUCCACAUG   7273

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657579.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||||||=||||||||||
targets:7147   UCCAAUCCCACUUAAUCCACAUG   7169

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020539703.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:62   UCCAAUCCCGCUCAAUCCACAUG   84

1.0 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675817.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:4060   UC-AAUCCCACUCAAUCCACAUG   4081

0.0 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:2906   UCCAAUCCCGCUCAAUCCACAUG   2928

1.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:2802   UCCAAUCCCGCUCAAUCCACAUG   2824

1.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:2350   UCCAAUCUCACUCAAUCCACAUG   2372

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:2290   UCCAAUCUCACUCAAUCCACAUG   2312

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:2283   UCCAAUCUCACUCAAUCCACAUG   2305

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:2155   UCCAAUCUCACUCAAUCCACAUG   2177

1.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:2154   UCCAAUCUCACUCAAUCCACAUG   2176

1.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:2082   UCCAAUCUCACUCAAUCCACAUG   2104

1.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
XM_008664275.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:2142   UCCAAUCCCGCUCAAUCCACAUG   2164

1.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:2031   UCCAAUCCCGCUCAAUCCACAUG   2053

1.0 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664276.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:2049   UCCAAUCCCGCUCAAUCCACAUG   2071

1.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:1954   UCCAAUCCCGCUCAAUCCACAUG   1976

1.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:1888   UCCAAUCCCGCUCAAUCCACAUG   1910

1.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645912.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:1621   UCCAAUCCCGCUCAAUCCACAUG   1643

1.0 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
BT066987.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:1418   UC-AAUCCCACUCAAUCCACAUG   1439

0.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:1130   UCCAAUCCCGCUCAAUCCACAUG   1152

1.0 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||=|||||||||||||
targets:1130   UCCAAUCCCGCUCAAUCCACAUG   1152

1.0 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:1127   UC-AAUCCCACUCAAUCCACAUG   1148

0.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT041052.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:1127   UC-AAUCCCACUCAAUCCACAUG   1148

0.0 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
BT062183.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:248   UCCAAUCUCACUCAAUCCACAUG   270

1.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:457   UCCAAUCUCACUCAAUCCACAUG   479

1.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
EU942673.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:94   UC-AAUCCCACUCAAUCCACAUG   115

0.0 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
JB163480.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||||||=||||||||||
targets:100   UCCAAUCCCACUUAAUCCACAUG   122

1.5 Sequence 1144 from Patent EP2559767 NA coding protein psRNATarget
LQ235149.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||||||=||||||||||
targets:100   UCCAAUCCCACUUAAUCCACAUG   122

1.5 Sequence 1144 from Patent EP2985353 NA coding protein psRNATarget
HI403019.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||||||=||||||||||
targets:100   UCCAAUCCCACUUAAUCCACAUG   122

1.5 Sequence 1144 from Patent EP2074227 NA coding protein psRNATarget
LQ235150.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:101   UC-AAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
HI403020.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:101   UC-AAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
JB163481.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||||||||||||||||||
targets:101   UC-AAUCCCACUCAAUCCACAUG   122

0.0 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI405878.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUG   115

1.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
LQ238008.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUG   115

1.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
JB166339.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUG   115

1.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238007.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUG   111

1.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
HI405877.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUG   111

1.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
JB166338.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUG   111

1.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
JB166354.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUG   103

1.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUG   103

1.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUG   103

1.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
EZ092645.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||||||||||||||
targets:18   UCCAAUCUCACUCAAUCCACAUG   40

1.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
NM_001174368.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||=|||||||||||||||
targets:1446   UC-AAUCUCACUCAAUCCACAUG   1467

1.0 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||-||||=|||||||||||||||
targets:1446   UC-AAUCUCACUCAAUCCACAUG   1467

1.0 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
AY103719.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||==|||||||||||||
targets:880   UCCAAUCCUGCUCAAUCCACAUG   902

2.0 Zea mays PCO137008 mRNA sequence NA coding protein psRNATarget
JB163504.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=||=||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUG   122

2.5 Sequence 1168 from Patent EP2559767 NA coding protein psRNATarget
HI403043.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=||=||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUG   122

2.5 Sequence 1168 from Patent EP2074227 NA coding protein psRNATarget
LQ235173.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=||=||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUG   122

2.5 Sequence 1168 from Patent EP2985353 NA coding protein psRNATarget
LQ238033.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||==|||||||||||||
targets:81   UCCAAUCCUGCUCAAUCCACAUG   103

2.0 Sequence 4028 from Patent EP2985353 NA coding protein psRNATarget
HI405903.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||==|||||||||||||
targets:81   UCCAAUCCUGCUCAAUCCACAUG   103

2.0 Sequence 4028 from Patent EP2074227 NA coding protein psRNATarget
JB166364.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||==|||||||||||||
targets:81   UCCAAUCCUGCUCAAUCCACAUG   103

2.0 Sequence 4028 from Patent EP2559767 NA coding protein psRNATarget
XM_008666492.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||=|||||||||||||*
targets:3755   UCCAAUCCUACUCAAUCCACAUA   3777

2.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666491.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||=|||||||||||||*
targets:3750   UCCAAUCCUACUCAAUCCACAUA   3772

2.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546709.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||=|||||||||||||*
targets:3468   UCCAAUCCUACUCAAUCCACAUA   3490

2.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008666493.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||=|||||||||||||*
targets:3482   UCCAAUCCUACUCAAUCCACAUA   3504

2.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001148918.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||=||*
targets:1468   UCCAAUCCCACUCAAUCCAUAUA   1490

2.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||=||*
targets:1468   UCCAAUCCCACUCAAUCCAUAUA   1490

2.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
EU949831.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||=|||||||||||||*
targets:1015   UCCAAUCCUACUCAAUCCACAUA   1037

2.0 Zea mays clone 447574 mRNA sequence NA coding protein psRNATarget
BT018999.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  *||||||||*|||||||||=|||
targets:463   CCUAAUCCCUCUCAAUCCAUAUG   485

2.5 Zea mays clone Contig487.F mRNA sequence NA coding protein psRNATarget
EU952677.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  *=||||*||||||||||||||||
targets:987   CUUAAUACCACUCAAUCCACAUG   1009

1.0 Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT042439.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  *=||||*||||||||||||||||
targets:965   CUUAAUACCACUCAAUCCACAUG   987

1.0 Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds NA coding protein psRNATarget
BT066125.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  *=||||*||||||||||||||||
targets:1074   CUUAAUACCACUCAAUCCACAUG   1096

1.0 Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds NA coding protein psRNATarget
BT066485.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||||||||||||||||||*|*
targets:74   UUUAAUCCCACUCAAUCCACUUU   96

2.5 Zea mays full-length cDNA clone ZM_BFb0006P05 mRNA, complete cds NA coding protein psRNATarget
EU942657.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*|||||=|||||||||||||*
targets:237   UCCAAUCCUACUCAAUCCACAUA   259

2.0 Zea mays clone 1527578 mRNA sequence NA coding protein psRNATarget
HI403005.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||=||*
targets:100   UCCAAUCCCACUCAAUCCAUAUA   122

2.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
JB163466.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||=||*
targets:100   UCCAAUCCCACUCAAUCCAUAUA   122

2.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
LQ235135.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||||||||||=||*
targets:100   UCCAAUCCCACUCAAUCCAUAUA   122

2.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
EZ082720.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  |=||||||||||||||||||*|*
targets:70   UUUAAUCCCACUCAAUCCACUUU   92

2.5 TSA: Zea mays contig18363, mRNA sequence NA coding protein psRNATarget
XM_008678388.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||*|||||||||||
targets:1829   UCCAAUCCCACCCAAUCCACAUG   1851

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008678390.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||*|||||||||||
targets:1813   UCCAAUCCCACCCAAUCCACAUG   1835

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008659614.2
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||*|||||||||||
targets:187   UCCAAUCCCACACAAUCCACAUG   209

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA NA coding protein psRNATarget
EZ052459.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*=||||=||||||||||=|||
targets:26   UCCGAUCCUACUCAAUCCAUAUG   48

2.5 TSA: Zea mays contig53580, mRNA sequence NA coding protein psRNATarget
JB169733.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||*|||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUG   98

1.5 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
HI409272.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||*|||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUG   98

1.5 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
LQ241402.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||||||*|||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUG   98

1.5 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
XM_020546136.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  *|*|||=||||||||||=|||||
targets:3281   CCCAAUUCCACUCAAUCUACAUG   3303

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546135.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  *|*|||=||||||||||=|||||
targets:3134   CCCAAUUCCACUCAAUCUACAUG   3156

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA NA coding protein psRNATarget
EU948930.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  *|*|||=||||||||||=|||||
targets:422   CCCAAUUCCACUCAAUCUACAUG   444

2.5 Zea mays clone 390579 mRNA sequence NA coding protein psRNATarget
NM_001138165.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||*|||||||||||
targets:1218   UCCAAUCUCACCCAAUCCACAUG   1240

2.5 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||*|||||||||||
targets:1218   UCCAAUCUCACCCAAUCCACAUG   1240

2.5 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||*|||||||||||
targets:1056   UCCAAUCUCACCCAAUCCACAUG   1078

2.5 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT087300.1
ncRNA:23   AGAUUAGGGUGAGUUAGGUGUAC   1
  ||*||||=|||*|||||||||||
targets:1023   UCCAAUCUCACCCAAUCCACAUG   1045

2.5 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
BT068463.1
ncRNA:23   AGA-UUAGGGUGAGUUAGGUGUAC   1
  |=|-||||||*|||||||||=|||
targets:1207   UUUGAAUCCCCCUCAAUCCAUAUG   1230

2.5 Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds NA coding protein psRNATarget
EU972032.1
ncRNA:23   AGA-UUAGGGUGAGUUAGGUGUAC   1
  |=|-||||||*|||||||||=|||
targets:935   UUUGAAUCCCCCUCAAUCCAUAUG   958

2.5 Zea mays clone 373636 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151506.1
ncRNA:23   AGA-UUAGGGUGAGUUAGGUGUAC   1
  |=|-||||||*|||||||||=|||
targets:935   UUUGAAUCCCCCUCAAUCCAUAUG   958

2.5 Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA NA coding protein psRNATarget
BT068594.1
ncRNA:23   AGA-UUAGGGUGAGUUAGGUGUAC   1
  |=|-||||||*|||||||||=|||
targets:905   UUUGAAUCCCCCUCAAUCCAUAUG   928

2.5 Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds NA coding protein psRNATarget
AY104043.1
ncRNA:23   AGA-UUAGGGUGAGUUAGGUGUAC   1
  |=|-||||||*|||||||||=|||
targets:908   UUUGAAUCCCCCUCAAUCCAUAUG   931

2.5 Zea mays PCO145885 mRNA sequence NA coding protein psRNATarget
EU951312.1
ncRNA:23   AGA-UUAGGGUGAGUUAGGUGUAC   1
  |=|-||||||*|||||||||=|||
targets:368   UUUGAAUCCCCCUCAAUCCAUAUG   391

2.5 Zea mays clone 695515 mRNA sequence NA coding protein psRNATarget
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