Search result

BaseInfo

ncRNA ID	novel_zma_miR1529
Species	Zea mays
Class	miRNA
Genome position	Chr2:173759099-173759176 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AUAUGAAUUGGAUGAGAUUGAAAA - 24
Stem-loop(if miRNA)	--     A     A  A       ------AA      UGGA   AUAUG AUUGG UG GAUUGAA        AAGUUA    A   ||||| ||||| || |||||||        ||||||   UAUAC UAACC AC CUAAUUU        UUCAGU    G GA     G     C  C       AGGAUUUG      UUUA
Stem-loop sequence	AUAUGAAUUGGAUGAGAUUGAAAAAAGUUAUGGAAGAUUUUGACUUGUUUAGGAUUUAAUCCCACCCAAUGCAUAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT039499.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   ||||||||||||||||||||||=| targets:1539   UUUUCAAUCUCAUCCAAUUCAUGU   1562 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147267.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   ||||||||||||||||||||||=| targets:1539   UUUUCAAUCUCAUCCAAUUCAUGU   1562 Target Full Sequence	1.5	Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA	NA	coding protein	psRNATarget
XM_008667530.2	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   ||||||||||||||||||*||||| targets:2814   UUUUCAAUCUCAUCCAAUCCAUAU   2837 Target Full Sequence	1.5	PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA	NA	coding protein	psRNATarget
EU946263.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   ||||||||||||||||||*||||| targets:594   UUUUCAAUCUCAUCCAAUCCAUAU   617 Target Full Sequence	1.5	Zea mays clone 302506 mRNA sequence	NA	coding protein	psRNATarget
AY105812.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   ||||=|||||||||||||*||||| targets:1035   UUUUUAAUCUCAUCCAAUCCAUAU   1058 Target Full Sequence	1.5	Zea mays PCO140232 mRNA sequence	NA	coding protein	psRNATarget
EU951843.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   |||||||||||*|||||||||||* targets:545   UUUUCAAUCUCUUCCAAUUCAUAA   568 Target Full Sequence	2.5	Zea mays clone 1061479 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI405822.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   |||||||||*||||||||*||||| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
JB166283.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   |||||||||*||||||||*||||| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   |||||||||*||||||||*||||| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
EZ097094.1	ncRNA:24   AAAAGUUAGAGUAGGUUAAGUAUA   1   *||*|||||*|||||||||||||| targets:232   AUUCCAAUCACAUCCAAUUCAUAU   255 Target Full Sequence	1.0	TSA: Zea mays contig32749, mRNA sequence	NA	coding protein	psRNATarget