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BaseInfo

ncRNA ID novel_zma_miR1528
Species Zea mays
Class miRNA
Genome position Chr2:171124161-171124224 [+]
Reference genome RefGen_v4
Source SRR2089710
Length 20
Mature sequence(if miRNA) 1 - AGACUCGUUGGCUCGGCGAG - 20
Stem-loop(if miRNA) --  A       -----  UCGGCGAGCUAGGAGC
  AG CUCGUUG     GC                G
  || |||||||     ||
  UC GAGCAAC     GC                A
AG  -       GCCGA  UAGUGCAUUCGAGCUG
Stem-loop sequence AGACUCGUUGGCUCGGCGAGCUAGGAGCGAGUCGAGCUUACGUGAUCGAGCCGCAACGAGCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY109355.1
ncRNA:20   GAGCGGCUCGGUUGCUCAGA   1
  =|||*||||||||||||*||
targets:1373   UUCGGCGAGCCAACGAGCCU   1392

2.5 Zea mays CL49_2 mRNA sequence NA coding protein psRNATarget
XM_008651218.2
ncRNA:20   GAGCGGCUCGGUUGCUCAGA   1
  =|||*||||||||||||*||
targets:1502   UUCGGCGAGCCAACGAGCCU   1521

2.5 PREDICTED: Zea mays inositol polyphosphate multikinase IPK2 (LOC103630133), mRNA NA coding protein psRNATarget