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BaseInfo

ncRNA ID osa-miR156l-3p
Species Oryza sativa
Class miRNA
Genome position Chr5:5230609-5230764 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 127 - GCUCACUUCUCUUUCUGUCAGC - 148
Stem-loop(if miRNA) GCUAGGGA  C       -    -               UCU   CUU       U G  -----------           GAC
        GC GACAGAA GAGA GUGAGCAUAUAUAGU   UUC   GCAUAUG G UC           AUAUGUGUGUU   U
        || ||||||| |||| |||||||||||||||   |||   ||||||| | ||           |||||||||||   G
        CG CUGUCUU CUCU CACUCGUGUAUAUCG   AAG   CGUGUAC U AG           UAUAUACAUAG   A
CUAUUAAA  A       U    U               ---   -UU       U G  AGAGAGAGAUA           AGA
Stem-loop sequence GCUAGGGAGCCGACAGAAGAGAGUGAGCAUAUAUAGUUCUUUCCUUGCAUAUGUGGUCAUAUGUGUGUUGACUGAAGAGAUACAUAUAUAUAGAGAGAGAGAGUUCAUGUGCUUGAAGCUAUAUGUGCUCACUUCUCUUUCUGUCAGCAAAUUAUC

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).