Search result

BaseInfo

ncRNA ID	novel_zma_miR1519
Species	Zea mays
Class	miRNA
Genome position	Chr2:11392998-11393049 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR2287159;SRR2287164;SRR2089698;SRR2089699;SRR2089700;SRR2089705;SRR2089706
Length	24
Mature sequence(if miRNA)	29 - AGGCACUCGGCAAAGAAUGCAACA - 52
Stem-loop(if miRNA)	--AA  C                CGA     GC UUCUUUGCCGAGUGCC   C     || ||||||||||||||||     CG AAGAAACGGCUCACGG   A ACAA  U                AAA
Stem-loop sequence	AAGCCUUCUUUGCCGAGUGCCCGACAAAAGGCACUCGGCAAAGAAUGCAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676330.2	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   |||-|=|||||||||||||||||| targets:1715   UGU-GUAUUCUUUGCCGAGUGCCU   1737 Target Full Sequence	1.0	PREDICTED: Zea mays amino-acid permease BAT1 homolog (LOC103650760), mRNA	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   |||||**||||||||||||||||| targets:47   UGUUGGCUUCUUUGCCGAGUGCCU   70 Target Full Sequence	2.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   |||||**||||||||||||||||| targets:1146   UGUUGGCUUCUUUGCCGAGUGCCU   1169 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   |||||**||||||||||||||||| targets:1283   UGUUGGCUUCUUUGCCGAGUGCCU   1306 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   |||||**||||||||||||||||| targets:1283   UGUUGGCUUCUUUGCCGAGUGCCU   1306 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   **|*||=||||||||||||||=|| targets:501   AAUCGCGUUCUUUGCCGAGUGUCU   524 Target Full Sequence	2.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   ****||*||||||||||||||||* targets:9   CAAAGCCUUCUUUGCCGAGUGCCC   32 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI406093.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:74   GUAAAUGUUCUUUGCCGAGUGCCC   97 Target Full Sequence	3.0	Sequence 4218 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238223.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:74   GUAAAUGUUCUUUGCCGAGUGCCC   97 Target Full Sequence	3.0	Sequence 4218 from Patent EP2985353	NA	coding protein	psRNATarget
JB166554.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:74   GUAAAUGUUCUUUGCCGAGUGCCC   97 Target Full Sequence	3.0	Sequence 4218 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001175465.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:896   GUAAAUGUUCUUUGCCGAGUGCCC   919 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA	NA	coding protein	psRNATarget
BT065228.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:896   GUAAAUGUUCUUUGCCGAGUGCCC   919 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU942429.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:907   GUAAAUGUUCUUUGCCGAGUGCCC   930 Target Full Sequence	3.0	Zea mays clone 1497931 mRNA sequence	NA	coding protein	psRNATarget
XM_008673932.2	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1315   GUAAAUGUUCUUUGCCGAGUGCCC   1338 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008673931.2	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1319   GUAAAUGUUCUUUGCCGAGUGCCC   1342 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549486.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1394   GUAAAUGUUCUUUGCCGAGUGCCC   1417 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549484.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1399   GUAAAUGUUCUUUGCCGAGUGCCC   1422 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549487.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1399   GUAAAUGUUCUUUGCCGAGUGCCC   1422 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008673929.2	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1404   GUAAAUGUUCUUUGCCGAGUGCCC   1427 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549485.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1445   GUAAAUGUUCUUUGCCGAGUGCCC   1468 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673925.2	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1528   GUAAAUGUUCUUUGCCGAGUGCCC   1551 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943138.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1790   GUAAAUGUUCUUUGCCGAGUGCCC   1813 Target Full Sequence	3.0	Zea mays clone 1567640 mRNA sequence	NA	coding protein	psRNATarget
BT036012.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1779   GUAAAUGUUCUUUGCCGAGUGCCC   1802 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138773.1	ncRNA:24   ACAACGUAAGAAACGGCUCACGGA   1   *****==||||||||||||||||* targets:1779   GUAAAUGUUCUUUGCCGAGUGCCC   1802 Target Full Sequence	3.0	Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA	NA	coding protein	psRNATarget