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BaseInfo

ncRNA ID	novel_zma_miR1514
Species	Zea mays
Class	miRNA
Genome position	Chr1:7430812-7430958 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	124 - ACCGGACUGUCCGAUGCGCCCGAC - 147
Stem-loop(if miRNA)	--A   G   C     U        UG    A    -          G  AACGGC   AAG   GC   C  U  A    GGG GCA CGGAC GUCCGGUG  CACC GACA UGUCCGGUGC CC      UCC   UCC  AAA GG CG C    ||| ||| ||||| ||||||||  |||| |||| |||||||||| ||      |||   |||  ||| || ||    CCC CGU GCCUG CAGGCCAC  GUGG CUGU ACAGGCCACG GG      AGG   AGG  UUU CC GC U CAG   G   A     U        GU    C    G          -  --CUAA   --A   AA   A  -  U
Stem-loop sequence	AGGGGGCACCGGACUGUCCGGUGUGCACCAGACAUGUCCGGUGCGCCAACGGCUCCAAGUCCGCAAACGGUCGACUUCGCCAUUUAAGGAAGGAAAUCGGGCACCGGACAGUGUCCGGUGUGCACCGGACUGUCCGAUGCGCCCGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165868.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   ||||||||||*||||||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   ||||||||||*||||||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   ||||||=|||*||||||||||||| targets:584   GUCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   ||||||=|||*||||||||||||| targets:136   GUCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   *|||||||||*||||||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   *||*||||||*||||||||||||| targets:579   AUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   *|||||||||*||||||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   *||*||||||*||||||||||||| targets:579   AUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   *|||||||||*||||||||||||| targets:4377   AUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:86   GUCGCAUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	1.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
EZ108756.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:141   GUCGAUGGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	1.0	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*||||||||||||| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:470   GUCGCAUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CAGC-------CCGCGUAGCCUGUCAGGCCA   1   ||=|-------|||*||*||||||||||||| targets:688   GUUGCUCCGCUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:486   GUCGAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |*|*||||||*||||||||||||| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:486   GUCGAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |*|*||||||*||||||||||||| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:500   GUCGCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:500   GUCGCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||||||| targets:2535   GUCGACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	1.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   **||||||||*||||||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   **||||||||*||||||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||=|||*||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||=|||*||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||=|||*||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241219.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*=|||||||||||| targets:62   GUCGAGUGGCGCACUGGACAGUCCGGU   88 Target Full Sequence	2.5	Sequence 7214 from Patent EP2985353	NA	coding protein	psRNATarget
HI409089.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*=|||||||||||| targets:62   GUCGAGUGGCGCACUGGACAGUCCGGU   88 Target Full Sequence	2.5	Sequence 7214 from Patent EP2074227	NA	coding protein	psRNATarget
JB169550.1	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*=|||||||||||| targets:62   GUCGAGUGGCGCACUGGACAGUCCGGU   88 Target Full Sequence	2.5	Sequence 7214 from Patent EP2559767	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CAGC---CCGCGUAGCCUGUCAGGCCA   1   ||||---||||||*||||||||=|||| targets:411   GUCGCAUGGCGCACCGGACAGUUCGGU   437 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CAGC--------CCGCGUAGCCUGUCAGGCCA   1   ||||--------||=|||*||||||||||||| targets:753   GUCGAGUGCCCUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |*=|||=|||*||||||||||||| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGC-------CCGCGUAGCCUGUCAGGCCA   1   ||=|-------||=|||*||||||||||||| targets:814   GUUGCUCCGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |*=|||=|||*||||||||||||| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGC-------CCGCGUAGCCUGUCAGGCCA   1   ||=|-------||=|||*||||||||||||| targets:814   GUUGCUCCGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |*|*||=|||*||||||||||||| targets:828   GCCUGGUGCACCGGACAGUCCGGU   851 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   CAGC--CCGCGUAGCCUGUCAGGCCA   1   *|=|--||||||*||||||||||||| targets:171   UUUGAUGGCGCACCGGACAGUCCGGU   196 Target Full Sequence	1.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   **|*|||*||*||||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   **|*|||*||*||||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   **|*|||*||*||||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
BT042818.1	ncRNA:24   CAGC--CCGCGUAGCCUGUCAGGCCA   1   ||*|--||||||*|||||*||||||| targets:828   GUGGCAGGCGCACCGGACUGUCCGGU   853 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ091678.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*|||||*||||||| targets:10   GUCUGGCGCACCGGACUGUCCGGU   33 Target Full Sequence	2.5	TSA: Zea mays contig27327, mRNA sequence	NA	coding protein	psRNATarget
EZ088459.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*|||||*||||||| targets:82   GUCUGGCGCACCGGACUGUCCGGU   105 Target Full Sequence	2.5	TSA: Zea mays contig24105, mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*|||||*||||||| targets:294   GUCUGGCGCACCGGACUGUCCGGU   317 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
EU970212.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*|||||*||||||| targets:399   GUCUGGCGCACCGGACUGUCCGGU   422 Target Full Sequence	2.5	Zea mays clone 342257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952168.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*|||||*||||||| targets:301   GUCUGGCGCACCGGACUGUCCGGU   324 Target Full Sequence	2.5	Zea mays clone 1215356 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*|||||*||||||| targets:1270   GUCUGGCGCACCGGACUGUCCGGU   1293 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
BT069667.1	ncRNA:24   CAGCCCGCGUAGCCUGUCAGGCCA   1   |||*||||||*|||||*||||||| targets:1270   GUCUGGCGCACCGGACUGUCCGGU   1293 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   CCCGCGUAGCCUGUCAGGCCA   1   *||||||*||||||||||||| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	1.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
XM_008675750.2	ncRNA:24   CAGC--CCGCGUAGCCUGUCAGGCCA   1   **||--||=|||||||||||*||||| targets:1228   UCCGAUGGUGCAUCGGACAGACCGGU   1253 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103650089 (LOC103650089), mRNA	NA	coding protein	psRNATarget
LQ242135.1	ncRNA:23   AGC---CCGCGUAGCCUGUCAGGCCA   1   |||---||||||*|*||||||||||| targets:1   UCGAGUGGCGCACCAGACAGUCCGGU   26 Target Full Sequence	2.5	Sequence 8130 from Patent EP2985353	NA	coding protein	psRNATarget
HI410005.1	ncRNA:23   AGC---CCGCGUAGCCUGUCAGGCCA   1   |||---||||||*|*||||||||||| targets:1   UCGAGUGGCGCACCAGACAGUCCGGU   26 Target Full Sequence	2.5	Sequence 8130 from Patent EP2074227	NA	coding protein	psRNATarget
JB170466.1	ncRNA:23   AGC---CCGCGUAGCCUGUCAGGCCA   1   |||---||||||*|*||||||||||| targets:1   UCGAGUGGCGCACCAGACAGUCCGGU   26 Target Full Sequence	2.5	Sequence 8130 from Patent EP2559767	NA	coding protein	psRNATarget
HI409730.1	ncRNA:23   AGCCCGCGUAGCCUGUCAGGCCA   1   ||*||||||*|||||*||||||| targets:1   UCUGGCGCACCGGACUGUCCGGU   23 Target Full Sequence	2.5	Sequence 7855 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241860.1	ncRNA:23   AGCCCGCGUAGCCUGUCAGGCCA   1   ||*||||||*|||||*||||||| targets:1   UCUGGCGCACCGGACUGUCCGGU   23 Target Full Sequence	2.5	Sequence 7855 from Patent EP2985353	NA	coding protein	psRNATarget
JB170191.1	ncRNA:23   AGCCCGCGUAGCCUGUCAGGCCA   1   ||*||||||*|||||*||||||| targets:1   UCUGGCGCACCGGACUGUCCGGU   23 Target Full Sequence	2.5	Sequence 7855 from Patent EP2559767	NA	coding protein	psRNATarget