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BaseInfo

ncRNA ID	novel_zma_miR1511
Species	Zea mays
Class	miRNA
Genome position	Chr1:73438109-73438334 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR5105961
Length	24
Mature sequence(if miRNA)	1 - ACAUAGAAGACUGGUGCACAUGGU - 24
Stem-loop(if miRNA)	--        G C                                                              -AUUAUUCAA     A  UA       C  C ACUACA   ACAUAGAA A UGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACGUCUCUAGUUG          UUUAC AA  ACACCUU CA C      U   |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||  ||||||| || |      A   UGUAUCUU U ACCACGUGUACCACGUGUAUAAUUUAGUAGUGGUGAGUAAAAUCUAGAUUGCAGAGAUCAAC          AAAUG UU  UGUGGGA GU G      C CG        G A                                                              AAACCAUAUA     A  CC       A  U CACCAC
Stem-loop sequence	ACAUAGAAGACUGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACGUCUCUAGUUGAUUAUUCAAUUUACAAAUAACACCUUCCACCACUACAUACCACCACGUUGAAGGGUGUCCUUAGUAAAAUAUACCAAACAACUAGAGACGUUAGAUCUAAAAUGAGUGGUGAUGAUUUAAUAUGUGCACCAUGUGCACCAAUGUUCUAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552764.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3118   ACCAUGUACACCAGUCUUCUAUGU   3141 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3296   ACCAUGUACACCAGUCUUCUAUGU   3319 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget