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BaseInfo

ncRNA ID	osa-miR3981-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:4302813-4302938 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	85 - AGUAUUAGGAUACGUCUCAUC - 105
Stem-loop(if miRNA)	A  A          A               U     UA     -    A    GG GAAUAUA UA CUUAAAAUCG AUGGGACGUAUCCUA UACUA  AGUCU GAUA GUCU  A ||||||| || |||||||||| ||||||||||||||| |||||  ||||| |||| ||||  U CUUAUAU GU GGAUUUUGGC UACUCUGCAUAGGAU AUGAU  UUAGA CUGU CGGA  A        C  G          C               U     GC     U    A    GU
Stem-loop sequence	GAAUAUAAUAACUUAAAAUCGAAUGGGACGUAUCCUAUUACUAUAAGUCUGAUAAGUCUGGAUAUGAGGCAUGUCUAGAUUCGUAGUAUUAGGAUACGUCUCAUCCGGUUUUAGGGUGCUAUAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236305.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   |||||||=||||||||=|||| targets:19   GAUGAGAUGUAUCCUAGUACU   39 Target Full Sequence	2.5	Sequence 2300 from Patent EP2985353	NA	coding protein	psRNATarget
JB164636.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   |||||||=||||||||=|||| targets:19   GAUGAGAUGUAUCCUAGUACU   39 Target Full Sequence	2.5	Sequence 2300 from Patent EP2559767	NA	coding protein	psRNATarget
HI404175.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   |||||||=||||||||=|||| targets:19   GAUGAGAUGUAUCCUAGUACU   39 Target Full Sequence	2.5	Sequence 2300 from Patent EP2074227	NA	coding protein	psRNATarget
AK121676.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   ||||=||||||||||||||*| targets:2368   GAUGGGACGUAUCCUAAUAAU   2388 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033068N04, full insert sequence	NA	coding protein	psRNATarget
XM_015767057.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   ||||=||||||||||||||*| targets:2571   GAUGGGACGUAUCCUAAUAAU   2591 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IX.1 (LOC4326435), mRNA	L-type lectin-domain containing receptor kinase IX.1(LOC4326435)	coding protein	psRNATarget
AK106348.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   *|||=|||||||||||*|||| targets:1008   AAUGGGACGUAUCCUAUUACU   1028 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-101-H07, full insert sequence	NA	coding protein	psRNATarget
CT831562.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   *|||=|||||||||||*|||| targets:1045   AAUGGGACGUAUCCUAUUACU   1065 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032G14, full insert sequence	NA	coding protein	psRNATarget
AK240862.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   *|||*|||*|||||||||||| targets:480   AAUGUGACAUAUCCUAAUACU   500 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065023A09, full insert sequence	NA	coding protein	psRNATarget
XM_015777626.1	ncRNA:21   CUACUCUGCAUAGGAUUAUGA   1   *|||*|||*|||||||||||| targets:1515   AAUGUGACAUAUCCUAAUACU   1535 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group indole-3-glycerol phosphate lyase, chloroplastic (LOC9270552), mRNA	indole-3-glycerol phosphate lyase, chloroplastic(LOC9270552)	coding protein	psRNATarget

Reference

1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011).