Search result

BaseInfo

ncRNA ID novel_zma_miR1497
Species Zea mays
Class miRNA
Genome position Chr1:42233482-42233537 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089699;SRR2089703;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - AUUUAGAGGACGUUGCUGGAGGGA - 24
Stem-loop(if miRNA) --GA                    UUAG
    UCCAGCAGCGUUCUCUAAAU    A
    ||||||||||||||||||||
    AGGUCGUUGCAGGAGAUUUA    A
AGGG                    CCAA
Stem-loop sequence GAUCCAGCAGCGUUCUCUAAAUUUAGAAAACCAUUUAGAGGACGUUGCUGGAGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166442.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |||||||||||||||||||||||*
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4106 from Patent EP2559767 NA coding protein psRNATarget
HI405981.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |||||||||||||||||||||||*
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4106 from Patent EP2074227 NA coding protein psRNATarget
LQ238111.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |||||||||||||||||||||||*
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4106 from Patent EP2985353 NA coding protein psRNATarget
EZ094330.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ||||||||||||=||||||||||*
targets:15   UCCCUCCAGCAAUGUCCUCUAAAC   38

2.5 TSA: Zea mays contig29982, mRNA sequence NA coding protein psRNATarget
HI405979.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||||||||||||||*
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4104 from Patent EP2074227 NA coding protein psRNATarget
JB166440.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||||||||||||||*
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4104 from Patent EP2559767 NA coding protein psRNATarget
LQ238109.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||||||||||||||*
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.0 Sequence 4104 from Patent EP2985353 NA coding protein psRNATarget
JB166313.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||||||||||||||*
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.0 Sequence 3977 from Patent EP2559767 NA coding protein psRNATarget
HI405852.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||||||||||||||*
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.0 Sequence 3977 from Patent EP2074227 NA coding protein psRNATarget
LQ237982.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||||||||||||||*
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.0 Sequence 3977 from Patent EP2985353 NA coding protein psRNATarget
EU945316.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||||||||||||||*
targets:1313   CCCCUCCAGCAACGUCCUCUAAAC   1336

1.0 Zea mays clone 257973 mRNA sequence NA coding protein psRNATarget
EZ107270.1
ncRNA:24   AGG--GAGGUCGUUGCAGGAGAUUUA   1
  |||--||||||||=||||||||||||
targets:106   UCCGUCUCCAGCAGCGUCCUCUAAAU   131

1.5 TSA: Zea mays contig42928, mRNA sequence NA coding protein psRNATarget
BT088287.1
ncRNA:24   AGG--GAGGUCGUUGCAGGAGAUUUA   1
  |||--||||||||=||||||||||||
targets:583   UCCGUCUCCAGCAGCGUCCUCUAAAU   608

1.5 Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds NA coding protein psRNATarget
BT067838.1
ncRNA:24   AGG--GAGGUCGUUGCAGGAGAUUUA   1
  |||--||||||||=||||||||||||
targets:650   UCCGUCUCCAGCAGCGUCCUCUAAAU   675

1.5 Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds NA coding protein psRNATarget
BT054524.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ||=|||||*|||||||||||||||
targets:1757   UCUCUCCAACAACGUCCUCUAAAU   1780

1.0 Zea mays full-length cDNA clone ZM_BFc0129H19 mRNA, complete cds NA coding protein psRNATarget
NM_001152587.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ||=|||||*|||||||||||||||
targets:1757   UCUCUCCAACAACGUCCUCUAAAU   1780

1.0 Zea mays putative putrescine-binding domain family protein (LOC100279590), mRNA NA coding protein psRNATarget
XM_008680895.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ||=|||||*|||||||||||||||
targets:2709   UCUCUCCAACAACGUCCUCUAAAU   2732

1.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680896.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ||=|||||*|||||||||||||||
targets:2881   UCUCUCCAACAACGUCCUCUAAAU   2904

1.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X3, mRNA NA coding protein psRNATarget
JB166333.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||=|||||||||||*
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

2.5 Sequence 3997 from Patent EP2559767 NA coding protein psRNATarget
HI405872.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||=|||||||||||*
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

2.5 Sequence 3997 from Patent EP2074227 NA coding protein psRNATarget
LQ238002.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||=|||||||||||*
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

2.5 Sequence 3997 from Patent EP2985353 NA coding protein psRNATarget
EU975903.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  *||||||||||=|||||||||||*
targets:658   GCCCUCCAGCAGCGUCCUCUAAAC   681

2.5 Zea mays clone 504920 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008649073.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||=||||||||||||
targets:1783   UGUCUCCAGCAGCGUCCUCUAAAU   1806

1.5 PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649072.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||=||||||||||||
targets:1882   UGUCUCCAGCAGCGUCCUCUAAAU   1905

1.5 PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008662066.2
ncRNA:24   AGG-GAGGUCGUUGCAGGAGAUUUA   1
  |||-|||||*|||||||||||||||
targets:1094   UCCUCUCCAACAACGUCCUCUAAAU   1118

1.0 PREDICTED: Zea mays zinc finger protein ZAT8 (LOC103639302), mRNA NA coding protein psRNATarget
XM_008662066.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=|||=||||||||||||||*||
targets:1010   UGUCUCUAGCAACGUCCUCUAUAU   1033

2.5 PREDICTED: Zea mays zinc finger protein ZAT8 (LOC103639302), mRNA NA coding protein psRNATarget
XM_008683257.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*==|=||||||||||||||||||
targets:4146   UGUUUUCAGCAACGUCCUCUAAAU   4169

1.0 PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA NA coding protein psRNATarget
EU945347.1
ncRNA:24   AGG-GAGGUCGUUGCAGGAGAUUUA   1
  |||-|||||*=||||||||||||||
targets:353   UCCUCUCCAAUAACGUCCUCUAAAU   377

2.0 Zea mays clone 260245 mRNA sequence NA coding protein psRNATarget
XM_008671521.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  **=|||=||||||||=||||||||
targets:3934   GGUCUCUAGCAACGUUCUCUAAAU   3957

2.5 PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC103646897), mRNA NA coding protein psRNATarget
JB163788.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||||||*||
targets:34   UGUCUCCAGCAACGUCCUCUAUAU   57

1.5 Sequence 1452 from Patent EP2559767 NA coding protein psRNATarget
LQ235457.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||||||*||
targets:34   UGUCUCCAGCAACGUCCUCUAUAU   57

1.5 Sequence 1452 from Patent EP2985353 NA coding protein psRNATarget
HI403327.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||||||*||
targets:34   UGUCUCCAGCAACGUCCUCUAUAU   57

1.5 Sequence 1452 from Patent EP2074227 NA coding protein psRNATarget
NM_001143201.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||||||*||
targets:1309   UGUCUCCAGCAACGUCCUCUAUAU   1332

1.5 Zea mays Transmembrane ascorbate ferrireductase 1 (cl8731_1(323)), mRNA NA coding protein psRNATarget
BT037372.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||||||*||
targets:1309   UGUCUCCAGCAACGUCCUCUAUAU   1332

1.5 Zea mays full-length cDNA clone ZM_BFb0166L08 mRNA, complete cds NA coding protein psRNATarget
XM_008647679.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||||||*||
targets:1602   UGUCUCCAGCAACGUCCUCUAUAU   1625

1.5 PREDICTED: Zea mays serine/threonine-protein kinase OXI1 (LOC103627390), mRNA NA coding protein psRNATarget
XM_008673578.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||*||||||
targets:55   UGUCUCCAGCAACGUCCCCUAAAU   78

1.5 PREDICTED: Zea mays protein ALP1-like (LOC103649274), mRNA NA coding protein psRNATarget
XM_020550176.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||||||||||*||||||
targets:906   UAUCUCCAGCAACGUCCCCUAAAU   929

1.5 PREDICTED: Zea mays small G protein signaling modulator 1 (LOC103649936), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550176.1
ncRNA:24   AG-GGAGGUCGUUGCAGGAGAUUUA   1
  ||-=|||||*||||||||*||||||
targets:1000   UCAUCUCCAACAACGUCCCCUAAAU   1024

2.5 PREDICTED: Zea mays small G protein signaling modulator 1 (LOC103649936), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008677400.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ||=|||||*|||||*|||||||||
targets:5071   UCUCUCCAACAACGCCCUCUAAAU   5094

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560-like (LOC103651695), mRNA NA coding protein psRNATarget
EU943788.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |==|||||*|||||||||*|||||
targets:181   UUUCUCCAACAACGUCCUAUAAAU   204

2.5 Zea mays clone 1687319 mRNA sequence NA coding protein psRNATarget
EU943703.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||=|||||||*||||||||||
targets:75   UAUCUUCAGCAACUUCCUCUAAAU   98

2.5 Zea mays clone 1679827 mRNA sequence NA coding protein psRNATarget
AY106168.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||=|||||||*||||||
targets:596   UGUCUCCAGUAACGUCCCCUAAAU   619

2.5 Zea mays PCO134793 mRNA sequence NA coding protein psRNATarget
EU945404.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=||||||=|||*||||||||||
targets:911   UAUCUCCAGUAACAUCCUCUAAAU   934

2.5 Zea mays clone 265322 mRNA sequence NA coding protein psRNATarget
NM_001174271.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=|||||*||||||=||||||||
targets:1152   UGUCUCCACCAACGUUCUCUAAAU   1175

2.5 Zea mays uncharacterized LOC100381430 (LOC100381430), mRNA NA coding protein psRNATarget
BT061237.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=|||||*||||||=||||||||
targets:1152   UGUCUCCACCAACGUUCUCUAAAU   1175

2.5 Zea mays full-length cDNA clone ZM_BFb0125H23 mRNA, complete cds NA coding protein psRNATarget
XM_020547328.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |==|||||*|||||||||*|||||
targets:5212   UUUCUCCAACAACGUCCUAUAAAU   5235

2.5 PREDICTED: Zea mays phosphoinositide-specific phospholipase C (LOC100136827), transcript variant X1, mRNA NA coding protein psRNATarget
LQ237980.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ****|=|||||=||||||||||||
targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29

2.5 Sequence 3975 from Patent EP2985353 NA coding protein psRNATarget
HI405850.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ****|=|||||=||||||||||||
targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29

2.5 Sequence 3975 from Patent EP2074227 NA coding protein psRNATarget
JB166311.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ****|=|||||=||||||||||||
targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29

2.5 Sequence 3975 from Patent EP2559767 NA coding protein psRNATarget
BT085234.2
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  ****|||||=|=||||||||||||
targets:3   AGAAUCCAGUAGCGUCCUCUAAAU   26

2.5 Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds NA coding protein psRNATarget
XM_020550632.1
ncRNA:24   AGGGAGGUCGUUGCAGGAGAUUUA   1
  |*=*||=||||||||||*||||||
targets:316   UAUGUCUAGCAACGUCCCCUAAAU   339

2.5 PREDICTED: Zea mays uncharacterized LOC100193593 (LOC100193593), mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.