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BaseInfo

ncRNA ID	novel_zma_miR1496
Species	Zea mays
Class	miRNA
Genome position	Chr2:61688317-61688369 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	23
Mature sequence(if miRNA)	1 - UUUCUAUUUUUCCAAGGGAAAAU - 23
Stem-loop(if miRNA)	--          UC         A G   UUUCUAUUUU  CAAGGGAAA U A   ||||||||||  ||||||||| | A   AAAGAUAAAA  GUUCCCUUU A U CA          GA         A A
Stem-loop sequence	UUUCUAUUUUUCCAAGGGAAAAUGAAUAAAUUUCCCUUGAGAAAAUAGAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541969.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   |||||=||||||=|||||||||| targets:804   AUUUUUCCUUGGGAAAAUAGAAA   826 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   |*||||||||||=|||||||||| targets:1746   AAUUUCCCUUGGGAAAAUAGAAA   1768 Target Full Sequence	1.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
EU946703.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   ||||||=|||||||||||||*|| targets:437   AUUUUCUCUUGGAAAAAUAGUAA   459 Target Full Sequence	2.5	Zea mays clone 322886 mRNA sequence	NA	coding protein	psRNATarget
XM_020553277.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   |||||==|*|||||||||||||| targets:2463   AUUUUUUCGUGGAAAAAUAGAAA   2485 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553278.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   |||||==|*|||||||||||||| targets:2452   AUUUUUUCGUGGAAAAAUAGAAA   2474 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001152676.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   |||||==|*|||||||||||||| targets:2375   AUUUUUUCGUGGAAAAAUAGAAA   2397 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279717 (cl715_-2a), mRNA	NA	coding protein	psRNATarget
BT054753.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   |||||==|*|||||||||||||| targets:2375   AUUUUUUCGUGGAAAAAUAGAAA   2397 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0025A06 mRNA, complete cds	NA	coding protein	psRNATarget
EU942948.1	ncRNA:23   UAAAAGGGAACCUUUUUAUCUUU   1   |||||==|*|||||||||||||| targets:6   AUUUUUUCGUGGAAAAAUAGAAA   28 Target Full Sequence	3.0	Zea mays clone 1547322 mRNA sequence	NA	coding protein	psRNATarget