Search result

BaseInfo

ncRNA ID	novel_zma_miR1495
Species	Zea mays
Class	miRNA
Genome position	Chr1:52648645-52648712 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR2287031;SRR2287163;SRR2089699;SRR2089702;SRR2089703;SRR2089707
Length	21
Mature sequence(if miRNA)	1 - CAAUUUAGGGACUAAAAUAAA - 21
Stem-loop(if miRNA)	--           AUA           A      A   UAUUUUAGUUC   UAAAUUGUUAA UACGGA A   |||||||||||   ||||||||||| |||||| G   AUAAAAUCAGG   AUUUAACGGUU AUGCUU U AA           --G           -      U
Stem-loop sequence	UAUUUUAGUUCAUAUAAAUUGUUAAAUACGGAAAGUUUUCGUAUUGGCAAUUUAGGGACUAAAAUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546127.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   ||||||||||||=|||||||| targets:1436   UUUAUUUUAGUCUCUAAAUUG   1456 Target Full Sequence	1.5	PREDICTED: Zea mays myb-related protein 330 (LOC103642827), mRNA	NA	coding protein	psRNATarget
NM_001111805.2	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |||||||||||=||||||||| targets:1524   UUUAUUUUAGUUCCUAAAUUG   1544 Target Full Sequence	1.5	Zea mays uncharacterized LOC542191 (TIDP2941), mRNA	NA	coding protein	psRNATarget
AY104678.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |||||||||||=||||||||| targets:1513   UUUAUUUUAGUUCCUAAAUUG   1533 Target Full Sequence	1.5	Zea mays PCO081661 mRNA sequence	NA	coding protein	psRNATarget
LQ239062.1	ncRNA:21   AA-AUAAAAUCAGGGAUUUAAC   1   ||-||||||||||||||||||| targets:23   UUCUAUUUUAGUCCCUAAAUUG   44 Target Full Sequence	2.0	Sequence 5057 from Patent EP2985353	NA	coding protein	psRNATarget
JB167393.1	ncRNA:21   AA-AUAAAAUCAGGGAUUUAAC   1   ||-||||||||||||||||||| targets:23   UUCUAUUUUAGUCCCUAAAUUG   44 Target Full Sequence	2.0	Sequence 5057 from Patent EP2559767	NA	coding protein	psRNATarget
HI406932.1	ncRNA:21   AA-AUAAAAUCAGGGAUUUAAC   1   ||-||||||||||||||||||| targets:23   UUCUAUUUUAGUCCCUAAAUUG   44 Target Full Sequence	2.0	Sequence 5057 from Patent EP2074227	NA	coding protein	psRNATarget
BT085047.1	ncRNA:21   AA-AUAAAAUCAGGGAUUUAAC   1   ||-||||||||||||||||||* targets:1235   UUCUAUUUUAGUCCCUAAAUUA   1256 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
AY111308.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |*||||||||||=|||||||| targets:1066   UCUAUUUUAGUCUCUAAAUUG   1086 Target Full Sequence	1.5	Zea mays CL5730_1 mRNA sequence	NA	coding protein	psRNATarget
LQ235369.1	ncRNA:21   AAA-UAAAAUCAGGGAUUUAAC   1   |||-|||||||||||||||||* targets:10   UUUCAUUUUAGUCCCUAAAUUA   31 Target Full Sequence	3.0	Sequence 1364 from Patent EP2985353	NA	coding protein	psRNATarget
JB163700.1	ncRNA:21   AAA-UAAAAUCAGGGAUUUAAC   1   |||-|||||||||||||||||* targets:10   UUUCAUUUUAGUCCCUAAAUUA   31 Target Full Sequence	3.0	Sequence 1364 from Patent EP2559767	NA	coding protein	psRNATarget
HI403239.1	ncRNA:21   AAA-UAAAAUCAGGGAUUUAAC   1   |||-|||||||||||||||||* targets:10   UUUCAUUUUAGUCCCUAAAUUA   31 Target Full Sequence	3.0	Sequence 1364 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020549695.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |*||||||||||=|||||||* targets:2632   UCUAUUUUAGUCUCUAAAUUA   2652 Target Full Sequence	2.5	PREDICTED: Zea mays Exonuclease domain-containing protein 1 (umc1347), transcript variant X9, mRNA	NA	coding protein	psRNATarget
BT063859.2	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   **||||||||||=|||||||* targets:1079   ACUAUUUUAGUCUCUAAAUUA   1099 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0113G11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175060.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   **||||||||||=|||||||* targets:1079   ACUAUUUUAGUCUCUAAAUUA   1099 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382311 (LOC100382311), mRNA	NA	coding protein	psRNATarget
HI403393.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |**|||||||||||||||||* targets:11   UCCAUUUUAGUCCCUAAAUUA   31 Target Full Sequence	2.0	Sequence 1518 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235523.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |**|||||||||||||||||* targets:11   UCCAUUUUAGUCCCUAAAUUA   31 Target Full Sequence	2.0	Sequence 1518 from Patent EP2985353	NA	coding protein	psRNATarget
JB163854.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |**|||||||||||||||||* targets:11   UCCAUUUUAGUCCCUAAAUUA   31 Target Full Sequence	2.0	Sequence 1518 from Patent EP2559767	NA	coding protein	psRNATarget
EU947016.1	ncRNA:21   AAAUAAAAUCAGGGAUUUAAC   1   |*||||||||||||||*|||* targets:321   UCUAUUUUAGUCCCUACAUUA   341 Target Full Sequence	2.5	Zea mays clone 326144 mRNA sequence	NA	coding protein	psRNATarget