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BaseInfo

ncRNA ID novel_zma_miR1490
Species Zea mays
Class miRNA
Genome position Chr1:59291868-59291924 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR1997865
Length 24
Mature sequence(if miRNA) 1 - UUUUGUUGGGCACUCGGCAAAGAA - 24
Stem-loop(if miRNA) --                    UUUGCC
  CUUUGUCGAGUGCUCGGCAA      A
  ||||||||||||||||||||      A
  GAAACGGCUCACGGGUUGUU      G
AA                    UUUUUU
Stem-loop sequence CUUUGUCGAGUGCUCGGCAAUUUGCCAAGUUUUUUUUGUUGGGCACUCGGCAAAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654495.2
ncRNA:24   AAGAAACGGCUCACGGGUUGUUUU   1
  |||||||||||||||||=||||||
targets:16   UUCUUUGCCGAGUGCCCGACAAAA   39

1.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
XM_020545810.1
ncRNA:24   AAGAAACGGCUCACGGGUUGUUUU   1
  ||=||||=|||||||||=||||||
targets:330   UUUUUUGUCGAGUGCCCGACAAAA   353

2.5 PREDICTED: Zea mays zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC109943047), mRNA NA coding protein psRNATarget
XM_008671736.2
ncRNA:24   AAGAAACGGCUCACGGGUUGUUUU   1
  **|||||||||||||||=||||||
targets:253   GACUUUGCCGAGUGCCCGACAAAA   276

1.5 PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA NA coding protein psRNATarget