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BaseInfo

ncRNA ID	novel_zma_miR1489
Species	Zea mays
Class	miRNA
Genome position	Chr1:63039824-63040004 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089715;SRR2287165;SRR5451004;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - CUUAUAUACUAGGACGGAGGGAGU - 24
Stem-loop(if miRNA)	--    C     AC          CG -      ------C    -- U  AAAGACCAAGAAAUGUAUUUAAUUCUCUGUAUCAACACUAGUAC   UCCC CUGUC  AGUAUGUAGG  G AACCAU       UCUU  G UC                                            C   |||| |||||  ||||||||||  | ||||||       ||||  | ||                                            A   AGGG GGCAG  UCAUAUAUUC  C UUGGUA       ACAU  G GG                                            C UG    A     GA          CA A      AAAAAUA    CA -  UAUUAUAUUCCACACGAGAGAUAUCUGUACGCAUGUAGCUACUU
Stem-loop sequence	UCCCCCUGUCACAGUAUGUAGGCGGAACCAUCUCUUGUUCAAAGACCAAGAAAUGUAUUUAAUUCUCUGUAUCAACACUAGUACCACUUCAUCGAUGUACGCAUGUCUAUAGAGAGCACACCUUAUAUUAUGGGACUACAAUAAAAAAUGGUUACACCUUAUAUACUAGGACGGAGGGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941116.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   ||||||||||||||||*||||||| targets:558   ACUCCCUCCGUCCUAGGAUAUAAG   581 Target Full Sequence	1.5	Zea mays clone 1291101 mRNA sequence	NA	coding protein	psRNATarget
EU974289.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   |||||||||||||*|||||||||| targets:194   ACUCCCUCCGUCCCAGUAUAUAAG   217 Target Full Sequence	1.5	Zea mays clone 445101 mRNA sequence	NA	coding protein	psRNATarget
XM_020546407.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   |||||||=|||||*|||||||||| targets:779   ACUCCCUUCGUCCCAGUAUAUAAG   802 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109943429), mRNA	NA	coding protein	psRNATarget
AY106001.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   |*|||||||||=|||||||||||* targets:893   AAUCCCUCCGUUCUAGUAUAUAAA   916 Target Full Sequence	2.5	Zea mays PCO085514 mRNA sequence	NA	coding protein	psRNATarget