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BaseInfo

ncRNA ID novel_zma_miR1486
Species Zea mays
Class miRNA
Genome position Chr1:70187495-70187631 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089712;SRR2089703
Length 24
Mature sequence(if miRNA) 1 - GAGACGUUAGAUCUGAGAUGGAUA - 24
Stem-loop(if miRNA) --C           A               C   G          UAAG      C    A  UGGUG
   UCAUUUUAGAU UAACGUCUCUAGUUG UUG UGUAAUUUGC    GACAUC UCUA CG     G
   ||||||||||| ||||||||||||||| ||| ||||||||||    |||||| |||| ||     G
   GGUAGAGUCUA AUUGCAGAGAUCAAC AAU ACAUUAAAUG    UUGUAG AGGU GU     G
AUA           G               U   A          UUUA      A    G  GAUGU
Stem-loop sequence CUCAUUUUAGAUAUAACGUCUCUAGUUGCUUGGUGUAAUUUGCUAAGGACAUCCUCUAACGUGGUGGGGUGUAGUGGUGGAAGAUGUUAUUUGUAAAUUACAAUAAUCAACUAGAGACGUUAGAUCUGAGAUGGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235404.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  |||||||*|||||||||||||=||
targets:15   UAUCCAUAUCAGAUCUAACGUUUC   38

2.5 Sequence 1399 from Patent EP2985353 NA coding protein psRNATarget
JB163735.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  |||||||*|||||||||||||=||
targets:15   UAUCCAUAUCAGAUCUAACGUUUC   38

2.5 Sequence 1399 from Patent EP2559767 NA coding protein psRNATarget
HI403274.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  |||||||*|||||||||||||=||
targets:15   UAUCCAUAUCAGAUCUAACGUUUC   38

2.5 Sequence 1399 from Patent EP2074227 NA coding protein psRNATarget
BT037068.1
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  ||||------|||=|=|||||||||||||=
targets:898   UAUCACCACUCAUUUUAGAUCUAACGUCUU   927

3.0 Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds NA coding protein psRNATarget
BT087938.1
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  ||||------|||=|=|||||||||||||=
targets:863   UAUCACCACUCAUUUUAGAUCUAACGUCUU   892

3.0 Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds NA coding protein psRNATarget
BT018927.1
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  ||||------|||=|=|||||||||||||=
targets:1043   UAUCACCACUCAUUUUAGAUCUAACGUCUU   1072

3.0 Zea mays clone Contig55.F mRNA sequence NA coding protein psRNATarget
XM_008679083.2
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  ||||------|||=|=|||||||||||||=
targets:2011   UAUCACCACUCAUUUUAGAUCUAACGUCUU   2040

3.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008679080.2
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  ||||------|||=|=|||||||||||||=
targets:2020   UAUCACCACUCAUUUUAGAUCUAACGUCUU   2049

3.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA NA coding protein psRNATarget
JB163685.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*=|||=|=||||||||||||||
targets:15   CACUCAUUUUAGAUCUAACGUCUC   38

2.0 Sequence 1349 from Patent EP2559767 NA coding protein psRNATarget
HI403224.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*=|||=|=||||||||||||||
targets:15   CACUCAUUUUAGAUCUAACGUCUC   38

2.0 Sequence 1349 from Patent EP2074227 NA coding protein psRNATarget
LQ235354.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*=|||=|=||||||||||||||
targets:15   CACUCAUUUUAGAUCUAACGUCUC   38

2.0 Sequence 1349 from Patent EP2985353 NA coding protein psRNATarget
LQ235513.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*=|||=|=||||||||||||||
targets:15   CACUCAUUUUAGAUCUAACGUCUC   38

2.0 Sequence 1508 from Patent EP2985353 NA coding protein psRNATarget
JB163844.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*=|||=|=||||||||||||||
targets:15   CACUCAUUUUAGAUCUAACGUCUC   38

2.0 Sequence 1508 from Patent EP2559767 NA coding protein psRNATarget
HI403383.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*=|||=|=||||||||||||||
targets:15   CACUCAUUUUAGAUCUAACGUCUC   38

2.0 Sequence 1508 from Patent EP2074227 NA coding protein psRNATarget
BT087210.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*=|||=|=||||||||||||||
targets:341   CACUCAUUUUAGAUCUAACGUCUC   364

2.0 Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds NA coding protein psRNATarget
XM_008664116.2
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*==||||=||||||||||||||
targets:679   CACUUAUCUUAGAUCUAACGUCUC   702

1.0 PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA NA coding protein psRNATarget
EZ113957.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  **|||||||||||||||||*|||*
targets:230   CUUCCAUCUCAGAUCUAACUUCUG   253

2.5 TSA: Zea mays contig49618, mRNA sequence NA coding protein psRNATarget
LQ235412.1
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  *|||------|||=|=|||||||||||||=
targets:13   CAUCACCGCUCAUUUUAGAUCUAACGUCUU   42

3.0 Sequence 1407 from Patent EP2985353 NA coding protein psRNATarget
JB163743.1
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  *|||------|||=|=|||||||||||||=
targets:13   CAUCACCGCUCAUUUUAGAUCUAACGUCUU   42

3.0 Sequence 1407 from Patent EP2559767 NA coding protein psRNATarget
HI403282.1
ncRNA:24   AUAG------GUAGAGUCUAGAUUGCAGAG   1
  *|||------|||=|=|||||||||||||=
targets:13   CAUCACCGCUCAUUUUAGAUCUAACGUCUU   42

3.0 Sequence 1407 from Patent EP2074227 NA coding protein psRNATarget
EU948462.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  ||*==||=|=|||||||||||||*
targets:438   UACUUAUUUUAGAUCUAACGUCUA   461

3.0 Zea mays clone 377988 mRNA sequence NA coding protein psRNATarget
BT016456.1
ncRNA:24   AUAGGUAGAGUCUAGAUUGCAGAG   1
  *|*||*|||=|||||||||||||=
targets:44   CACCCUUCUUAGAUCUAACGUCUU   67

3.0 Zea mays clone Contig289 mRNA sequence NA coding protein psRNATarget
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