Search result

BaseInfo

ncRNA ID	novel_zma_miR1481
Species	Zea mays
Class	miRNA
Genome position	Chr1:86387798-86387884 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	64 - AAGAAAACACUCGACGAAGAAGCU - 87
Stem-loop(if miRNA)	--A      -  C   A        C               UUA    AGAAAA CA UCG CGAAGAAG UCUUUGCCGAGUGUU   U    |||||| || ||| |||||||| |||||||||||||||    UCUUUU GU AGC GUUUCUUU AGAAACGGCUCACAG   U AAC      C  C   C        A               UUU
Stem-loop sequence	AAGAAAACACUCGACGAAGAAGCUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGAAUUUCUUUGCCGACUGCUUUUCUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:24   UCGAAGAAGCAGCUCACAAAAGAA   1   ||=|||||=||||||||||||||| targets:84   AGUUUCUUUGUCGAGUGUUUUCUU   107 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   UCGAAGAAGCAGCUCACAAAAGAA   1   ||=|||||=||||||||||||||| targets:84   AGUUUCUUUGUCGAGUGUUUUCUU   107 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UCGAAGAAGCAGCUCACAAAAGAA   1   ||=|||||=||||||||||||||| targets:2103   AGUUUCUUUGUCGAGUGUUUUCUU   2126 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UCGAAGAAGCAGCUCACAAAAGAA   1   ||=|||||=||||||||||||||| targets:2103   AGUUUCUUUGUCGAGUGUUUUCUU   2126 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget