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BaseInfo

ncRNA ID	novel_zma_miR1480
Species	Zea mays
Class	miRNA
Genome position	Chr1:87756786-87756845 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - GGCAAAGCGUCGAGCACUCGGCAA - 24
Stem-loop(if miRNA)	--         -A C G U               GCCGAGUGC  G A G CUUUGCCGAGUGC   |||||||||  | | | ||||||||||||G   CGGCUCACG  C U C GAAACGGCUCACG AA         AG - G -
Stem-loop sequence	GCCGAGUGCAGCAGGUCUUUGCCGAGUGCGGCACUCGGCAAAGCGUCGAGCACUCGGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT040097.1	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   ||*|*||||||||||||||||||| targets:1224   UUACGGAGUGCUCGACGCUUUGCC   1247 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0064J20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147510.1	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   ||*|*||||||||||||||||||| targets:1224   UUACGGAGUGCUCGACGCUUUGCC   1247 Target Full Sequence	0.0	Zea mays uncharacterized LOC100273061 (LOC100273061), mRNA	NA	coding protein	psRNATarget
XM_008679385.2	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:492   ACGCCGAGGGCACGACGCUUUGCC   515 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679388.2	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020551683.1	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008679392.2	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008679387.2	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001176061.1	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:174   ACGCCGAGGGCACGACGCUUUGCC   197 Target Full Sequence	2.5	Zea mays Tetraspanin-2 (LOC100383407), mRNA	NA	coding protein	psRNATarget
BT067138.1	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:174   ACGCCGAGGGCACGACGCUUUGCC   197 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0208I23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679389.2	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008679391.2	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020551681.1	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551682.1	ncRNA:24   AACGGCUCACGAGCUGCGAAACGG   1   **||||||*||*|||||||||||| targets:493   ACGCCGAGGGCACGACGCUUUGCC   516 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X2, mRNA	NA	coding protein	psRNATarget