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BaseInfo

ncRNA ID novel_zma_miR1478
Species Zea mays
Class miRNA
Genome position Chr1:96684576-96684625 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089712;SRR2089715;SRR5451003;SRR2089698;SRR2089699;SRR2089702;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 27 - GAAAUGGACGAGCCGAGCCGAGCC - 50
Stem-loop(if miRNA) --  AA         -  A  -  A  
  GA  UGGACGAGC CG GC CG GCC
  ||  ||||||||| || || || ||A
  CU  ACUUGCUCG GC CG GC CGA
CA  -G         A  -  A  -  
Stem-loop sequence GAAAUGGACGAGCCGAGCCGAGCCAAGCCGAGCCGAGCUCGUUCAGUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU953849.1
ncRNA:24   CCGAGCCGAGCCGAGCAGGUAAAG   1
  |||||||||||||||*|||||||=
targets:834   GGCUCGGCUCGGCUCAUCCAUUUU   857

2.5 Zea mays clone 1447656 mRNA sequence NA coding protein psRNATarget
EU941349.1
ncRNA:24   CCGAGCCGAGCCGAGCAGGUAAAG   1
  *|||||||||||||||*|||||||
targets:393   AGCUCGGCUCGGCUCGGCCAUUUC   416

1.5 Zea mays clone 1447079 mRNA sequence NA coding protein psRNATarget