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BaseInfo

ncRNA ID novel_zma_miR1475
Species Zea mays
Class miRNA
Genome position Chr1:44553728-44553811 [+]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 1 - GUGGAUUGGGUGAUAUUGAGUCGG - 24
Stem-loop(if miRNA) ----------------------          --U   A    G C   UUAA
                      GUGGAUUGGG   GAU UUGA U GGU    A
                      ||||||||||   ||| |||| | |||
                      UACCUAACCU   CUA AACU A CUA    U
UACACCUAAUUACACAUAACCC          UAC   A    G A   UACC
Stem-loop sequence GUGGAUUGGGUGAUAUUGAGUCGGUUUAAAUCCAUAUCAAGUCAAAAUCCAUUCCAAUCCAUCCCAAUACACAUUAAUCCACAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT041309.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||||||||||||||=|||||||||
targets:103   CCGACUCAAUAUCAUCCAAUCCAC   126

1.5 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
EU946804.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |||||||||||||||||||||=|*
targets:616   CCGACUCAAUAUCACCCAAUCUAA   639

2.5 Zea mays clone 323768 mRNA sequence NA coding protein psRNATarget
XM_020542630.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *|||||||||||||=||||||||=
targets:5879   ACGACUCAAUAUCAUCCAAUCCAU   5902

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542629.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *|||||||||||||=||||||||=
targets:5941   ACGACUCAAUAUCAUCCAAUCCAU   5964

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542631.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *|||||||||||||=||||||||=
targets:6356   ACGACUCAAUAUCAUCCAAUCCAU   6379

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020545220.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |=||||||||||||||*|||||||
targets:3744   CUGACUCAAUAUCACCAAAUCCAC   3767

1.5 PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1-like (LOC103640669), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020545218.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |=||||||||||||||*|||||||
targets:3778   CUGACUCAAUAUCACCAAAUCCAC   3801

1.5 PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1-like (LOC103640669), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545219.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |=||||||||||||||*|||||||
targets:3821   CUGACUCAAUAUCACCAAAUCCAC   3844

1.5 PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1-like (LOC103640669), transcript variant X2, mRNA NA coding protein psRNATarget
LQ238785.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |**|||||||||||=|||||||||
targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163

1.5 Sequence 4780 from Patent EP2985353 NA coding protein psRNATarget
JB167116.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |**|||||||||||=|||||||||
targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163

1.5 Sequence 4780 from Patent EP2559767 NA coding protein psRNATarget
HI406655.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |**|||||||||||=|||||||||
targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163

1.5 Sequence 4780 from Patent EP2074227 NA coding protein psRNATarget
XM_020546921.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||*|||||||*|||||=|||||||
targets:2793   CCCACUCAAUUUCACCUAAUCCAC   2816

2.5 PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |=*|||||||*||||=||||||||
targets:1441   CUCACUCAAUCUCACUCAAUCCAC   1464

2.5 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  |=*|||||||*||||=||||||||
targets:1441   CUCACUCAAUCUCACUCAAUCCAC   1464

2.5 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
EU974368.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ==**=|||||||||=|||||||||
targets:1242   UUUUUUCAAUAUCAUCCAAUCCAC   1265

1.5 Zea mays clone 447232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ107799.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *=*||*|||||||||||||||||=
targets:138   AUCACACAAUAUCACCCAAUCCAU   161

2.0 TSA: Zea mays contig43457, mRNA sequence NA coding protein psRNATarget
AY108253.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *=*||*|||||||||||||||||=
targets:478   AUCACACAAUAUCACCCAAUCCAU   501

2.0 Zea mays PCO127957 mRNA sequence NA coding protein psRNATarget
AY106055.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ==*|||=||||*||||||||||||
targets:979   UUAACUUAAUACCACCCAAUCCAC   1002

2.5 Zea mays PCO115884 mRNA sequence NA coding protein psRNATarget
BT088149.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *=*||*|||||||||||||||||=
targets:970   AUCACACAAUAUCACCCAAUCCAU   993

2.0 Zea mays full-length cDNA clone ZM_BFc0036O11 mRNA, complete cds NA coding protein psRNATarget
EU976164.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ==*|||=||||*||||||||||||
targets:983   UUAACUUAAUACCACCCAAUCCAC   1006

2.5 Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
NM_001159099.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ==*|||=||||*||||||||||||
targets:983   UUAACUUAAUACCACCCAAUCCAC   1006

2.5 Zea mays mitochondrial glycoprotein (LOC100286211), mRNA NA coding protein psRNATarget
BT038476.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *=*||*|||||||||||||||||=
targets:1002   AUCACACAAUAUCACCCAAUCCAU   1025

2.0 Zea mays full-length cDNA clone ZM_BFb0279E08 mRNA, complete cds NA coding protein psRNATarget
EU973942.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *=*||*|||||||||||||||||=
targets:1031   AUCACACAAUAUCACCCAAUCCAU   1054

2.0 Zea mays clone 424811 tobamovirus multiplication 3 mRNA, complete cds NA coding protein psRNATarget
NM_001158674.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  *=*||*|||||||||||||||||=
targets:1031   AUCACACAAUAUCACCCAAUCCAU   1054

2.0 Zea mays Tobamovirus multiplication protein 3 (TIDP2770), mRNA NA coding protein psRNATarget
EU957033.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||*||*||||*|||||||||||||
targets:1396   CCUACCCAAUCUCACCCAAUCCAC   1419

2.0 Zea mays clone 1581039 mRNA sequence NA coding protein psRNATarget
EU957741.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||*||*||||*|||||||||||||
targets:1397   CCUACCCAAUCUCACCCAAUCCAC   1420

2.0 Zea mays clone 1613489 mRNA sequence NA coding protein psRNATarget
BT087300.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1019   CCCAUCCAAUCUCACCCAAUCCAC   1042

2.0 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1052   CCCAUCCAAUCUCACCCAAUCCAC   1075

2.0 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1214   CCCAUCCAAUCUCACCCAAUCCAC   1237

2.0 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   GGCUGAGUUAUAGUGGGUUAGGUG   1
  ||*|=*||||*|||||||||||||
targets:1214   CCCAUCCAAUCUCACCCAAUCCAC   1237

2.0 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
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