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BaseInfo

ncRNA ID	novel_zma_miR1473
Species	Zea mays
Class	miRNA
Genome position	Chr1:143945697-143945770 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	1 - CUAAGGUUAGGCAGAUUGUGGCUC - 24
Stem-loop(if miRNA)	--        G        A  UU  ---      UAG   GCCACAAU UGCCUAAC UU  CC   UAAGUU   U   |||||||| |||||||| ||  ||   ||||||   U   CGGUGUUA ACGGAUUG AA  GG   GUUUAA   C CU        G        G  UC  CGU      CUU
Stem-loop sequence	GCCACAAUGUGCCUAACAUUUUCCUAAGUUUAGUUCUUCAAUUUGUGCGGCUAAGGUUAGGCAGAUUGUGGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403021.1	ncRNA:24   CUCGGUGUUAGACGGAUUGGAAUC   1   |*|||||||||||||||||=|||| targets:23   GCGCCACAAUCUGCCUAACUUUAG   46 Target Full Sequence	1.5	Sequence 1146 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235151.1	ncRNA:24   CUCGGUGUUAGACGGAUUGGAAUC   1   |*|||||||||||||||||=|||| targets:23   GCGCCACAAUCUGCCUAACUUUAG   46 Target Full Sequence	1.5	Sequence 1146 from Patent EP2985353	NA	coding protein	psRNATarget
JB163482.1	ncRNA:24   CUCGGUGUUAGACGGAUUGGAAUC   1   |*|||||||||||||||||=|||| targets:23   GCGCCACAAUCUGCCUAACUUUAG   46 Target Full Sequence	1.5	Sequence 1146 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020547797.1	ncRNA:24   CUCGGUGUUAGACGGAUUGGAAUC   1   |*||=||||||||||||||=|||| targets:2048   GUGCUACAAUCUGCCUAACUUUAG   2071 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100285478 (LOC100285478), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008673397.2	ncRNA:24   CUCGGUGUUAGACGGAUUGGAAUC   1   |*|||||||||||||*|||||||| targets:30   GCGCCACAAUCUGCCCAACCUUAG   53 Target Full Sequence	1.5	PREDICTED: Zea mays adenylate isopentenyltransferase 5, chloroplastic (LOC103649047), mRNA	NA	coding protein	psRNATarget
BT053849.1	ncRNA:24   CUCGGUGUUAGACGGAUUGGAAUC   1   |*||||||||||||||||*||||| targets:1676   GCGCCACAAUCUGCCUAAACUUAG   1699 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0307M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU961872.1	ncRNA:24   CUC---GGUGUUAGACGGAUUGGAAUC   1   *||---||||||||||*|||||||||| targets:1369   AAGGCACCACAAUCUGACUAACCUUAG   1395 Target Full Sequence	1.5	Zea mays clone 238809 mRNA sequence	NA	coding protein	psRNATarget