| ncRNA ID | osa-miR2871a-3p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr5:3877013-3877133 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 92 - UAUUUUAGUUUCUAUGGUCAC - 112 |
| Stem-loop(if miRNA) |
----- U C AA --------A - CUUU CA GGUGACCGUAGAAACUAG AUAGAAAA GUAG UAUCUCAA GUGA G || |||||||||||||||||| |||||||| |||| |||||||| |||| GU UCACUGGUAUCUUUGAUU UAUCUUUU CAUC AUAGGGUU CAUU U CGGUG U U -C AAUGAACAG G UACU |
| Stem-loop sequence | CAUGGUGACCGUAGAAACUAGCAUAGAAAAAAGUAGAUAUCUCAAGUGACUUUGUUCAUUUACGUUGGGAUAGACAAGUAACUACCUUUUCUAUUUUAGUUUCUAUGGUCACUUUGGUGGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HI403892.1 |
|
2.5 | Sequence 2017 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
| JB164353.1 |
|
2.5 | Sequence 2017 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
| LQ236022.1 |
|
2.5 | Sequence 2017 from Patent EP2985353 | NA | coding protein | psRNATarget |
| 1 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |
| 2 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |
| 3 | PMID:21791435
"Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)"; Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q; J Exp Bot. 62:4943-4954(2011). |
| 4 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |