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BaseInfo

ncRNA ID novel_zma_miR1469
Species Zea mays
Class miRNA
Genome position Chr2:10463894-10463998 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - UAUGAAUCUAAAGUGGUGAUCUUU - 24
Stem-loop(if miRNA) --     CAA         A        GG  CCCAC  G     GACU      G
  AGAUC   ACUUUAGAU UAUAUCAU  AC     AU UCAUU    CAUGUG A
  |||||   ||||||||| ||||||||  ||     || |||||    ||||||
  UCUAG   UGAAAUCUA GUAUGGUA  UG     UA AGUGA    GUACAC C
UU     UGG         A        -A  ----A  G     --AU      C
Stem-loop sequence AGAUCCAAACUUUAGAUAUAUAUCAUGGACCCCACAUGUCAUUGACUCAUGUGGACCCACAUGUAAGUGAGAUAGUAAUGGUAUGAAUCUAAAGUGGUGAUCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU952279.1
ncRNA:24   UUUCUAGUGGUGAAAUCUAAGUAU   1
  |||||||||||||||||||*||||
targets:642   AAAGAUCACCACUUUAGAUCCAUA   665

1.5 Zea mays clone 1275160 mRNA sequence NA coding protein psRNATarget