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BaseInfo

ncRNA ID	novel_zma_miR1460
Species	Zea mays
Class	miRNA
Genome position	Chr1:209740242-209740357 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR5451004;SRR2089698;SRR2089701;SRR2089702;SRR2089703;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	93 - GUUUGGGAGCAAGUGGAAUGGAGG - 116
Stem-loop(if miRNA)	--               G        A          U       U    U       A   GUUUGGGAGCAAGUG AAUGGAGG GAUUGAGGAG CUAGAAU CCUU UUAUUCA U   ||||||||||||||| |||||||| |||||||||| ||||||| |||| |||||||   CAAACCUUCGUUCAC UUACCUCC CUAACUCCUC GAUCUUA GGAA GAUAAGU U AA               A        -          C       -    U       U
Stem-loop sequence	GUUUGGGAGCAAGUGGAAUGGAGGAGAUUGAGGAGUCUAGAAUUCCUUUUUAUUCAAUUUUGAAUAGUAAGGAUUCUAGCCUCCUCAAUCCCUCCAUUACACUUGCUUCCAAACAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166488.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |||=||||=||||||||||||||| targets:101   CCUUCAUUUCACUUGCUCCCAAAC   124 Target Full Sequence	1.0	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
HI406027.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |||=||||=||||||||||||||| targets:101   CCUUCAUUUCACUUGCUCCCAAAC   124 Target Full Sequence	1.0	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |||=||||=||||||||||||||| targets:101   CCUUCAUUUCACUUGCUCCCAAAC   124 Target Full Sequence	1.0	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |||=||||=||||||||||||||| targets:2637   CCUUCAUUUCACUUGCUCCCAAAC   2660 Target Full Sequence	1.0	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |||=||||=||||||||||||||| targets:2637   CCUUCAUUUCACUUGCUCCCAAAC   2660 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
BT061256.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   ||||=||||||||||||=|||||| targets:1896   CCUCUAUUCCACUUGCUUCCAAAC   1919 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0127C16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |||=||||=||||||||||||||| targets:2725   CCUUCAUUUCACUUGCUCCCAAAC   2748 Target Full Sequence	1.0	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963261.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =|||||*|=||||||||||||||| targets:1035   UCUCCAAUUCACUUGCUCCCAAAC   1058 Target Full Sequence	2.0	Zea mays clone 260003 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150318.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =|||||*|=||||||||||||||| targets:1035   UCUCCAAUUCACUUGCUCCCAAAC   1058 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 2, mRNA	NA	coding protein	psRNATarget
NM_001320255.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =|||||*|=||||||||||||||| targets:1244   UCUCCAAUUCACUUGCUCCCAAAC   1267 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 1, mRNA	NA	coding protein	psRNATarget
BT017823.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =||=||*||||=|||||||||||| targets:865   UCUUCAAUCCAUUUGCUCCCAAAC   888 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =||=||*||||=|||||||||||| targets:3493   UCUUCAAUCCAUUUGCUCCCAAAC   3516 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget
EU943966.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   ||||=|*||=*||||||||||||| targets:339   CCUCUAAUCUCCUUGCUCCCAAAC   362 Target Full Sequence	3.0	Zea mays clone 1702383 mRNA sequence	NA	coding protein	psRNATarget
BT068351.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |=|==|||==*||||||||||||| targets:1058   CUUUUAUUUUUCUUGCUCCCAAAC   1081 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0118G09 mRNA, complete cds	NA	coding protein	psRNATarget
BT087317.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |=|==|||==*||||||||||||| targets:1121   CUUUUAUUUUUCUUGCUCCCAAAC   1144 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0035P13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152053.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |=|==|||==*||||||||||||| targets:1120   CUUUUAUUUUUCUUGCUCCCAAAC   1143 Target Full Sequence	3.0	Zea mays uncharacterized LOC100278941 (LOC100278941), mRNA	NA	coding protein	psRNATarget
EU976071.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   |=|==|||==*||||||||||||| targets:1120   CUUUUAUUUUUCUUGCUCCCAAAC   1143 Target Full Sequence	3.0	Zea mays clone 510554 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656913.2	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =|||||*|=|*||||||||||||| targets:1982   UCUCCAAUUCUCUUGCUCCCAAAC   2005 Target Full Sequence	3.0	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656912.2	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =|||||*|=|*||||||||||||| targets:2048   UCUCCAAUUCUCUUGCUCCCAAAC   2071 Target Full Sequence	3.0	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656914.2	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =|||||*|=|*||||||||||||| targets:2056   UCUCCAAUUCUCUUGCUCCCAAAC   2079 Target Full Sequence	3.0	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542191.1	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   =|||||*|=|*||||||||||||| targets:2149   UCUCCAAUUCUCUUGCUCCCAAAC   2172 Target Full Sequence	3.0	PREDICTED: Zea mays retrotransposon protein SINE subclass (LOC100286141), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008675165.2	ncRNA:24   GGAGGUAAGGUGAACGAGGGUUUG   1   ||||=|*||=*||||||||||||| targets:2788   CCUCUAAUCUCCUUGCUCCCAAAC   2811 Target Full Sequence	3.0	PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA	NA	coding protein	psRNATarget