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BaseInfo

ncRNA ID osa-miR5151
Species Oryza sativa
Class miRNA
Genome position Chr5:3661490-3661638 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 117 - UAAUGAUGUGGGUACGAAUGAA - 138
Stem-loop(if miRNA)                                                     A      C    GAUG   GA  G
GUUUGCUUCACUAAUGAUGUGGGUACGAAUGAACAAAAAUGUGACUAUUUUA GCUUCA UGUU    ACU  UG C
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    |||  ||
CAAACGAAGUGAUUACUACAUCCAUGCUUACUUGUUUUUACACUGAUAAAAU CGAAGU ACAA    UGA  AC G
                                                    C      -    ----   GC  A
Stem-loop sequence GUUUGCUUCACUAAUGAUGUGGGUACGAAUGAACAAAAAUGUGACUAUUUUAAGCUUCACUGUUGAUGACUGAUGGCGACACGAGUAACAUGAAGCCUAAAAUAGUCACAUUUUUGUUCAUUCGUACCUACAUCAUUAGUGAAGCAAAC

Reference

1 PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus";
Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RNA Biol. 8:538-547(2011).
2 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).