ncRNA ID | osa-miR5151 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr5:3661490-3661638 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 117 - UAAUGAUGUGGGUACGAAUGAA - 138 |
Stem-loop(if miRNA) |
                                                    A      C    GAUG   GA  G GUUUGCUUCACUAAUGAUGUGGGUACGAAUGAACAAAAAUGUGACUAUUUUA GCUUCA UGUU    ACU  UG C |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    |||  || CAAACGAAGUGAUUACUACAUCCAUGCUUACUUGUUUUUACACUGAUAAAAU CGAAGU ACAA    UGA  AC G                                                     C      -    ----   GC  A |
Stem-loop sequence | GUUUGCUUCACUAAUGAUGUGGGUACGAAUGAACAAAAAUGUGACUAUUUUAAGCUUCACUGUUGAUGACUGAUGGCGACACGAGUAACAUGAAGCCUAAAAUAGUCACAUUUUUGUUCAUUCGUACCUACAUCAUUAGUGAAGCAAAC |
1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |
2 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |