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BaseInfo

ncRNA ID	novel_zma_miR1455
Species	Zea mays
Class	miRNA
Genome position	Chr1:36174182-36174234 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	1 - ACUCGGCAAAGAAUCCAUCAGCGG - 24
Stem-loop(if miRNA)	--               -  U  GC  G   ACUCGGCAAAGAAUC CA CA  GG U   ||||||||||||||| || ||  ||   UGAGUCGUUUCUUGG GU GU  CC C UG               A  -  -A  C
Stem-loop sequence	ACUCGGCAAAGAAUCCAUCAGCGGGUCCCCAUGUGAGGUUCUUUGCUGAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167529.1	ncRNA:24   GGCGACUACCUAAGAAACGGCUCA   1   ||||||=*|||||||||||||||| targets:39   CCGCUGGCGGAUUCUUUGCCGAGU   62 Target Full Sequence	2.0	Sequence 5193 from Patent EP2559767	NA	coding protein	psRNATarget
HI407068.1	ncRNA:24   GGCGACUACCUAAGAAACGGCUCA   1   ||||||=*|||||||||||||||| targets:39   CCGCUGGCGGAUUCUUUGCCGAGU   62 Target Full Sequence	2.0	Sequence 5193 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239198.1	ncRNA:24   GGCGACUACCUAAGAAACGGCUCA   1   ||||||=*|||||||||||||||| targets:39   CCGCUGGCGGAUUCUUUGCCGAGU   62 Target Full Sequence	2.0	Sequence 5193 from Patent EP2985353	NA	coding protein	psRNATarget
HI406203.1	ncRNA:21   GACUACCUAAGAAACGGCUCA   1   ||||*|||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGU   21 Target Full Sequence	1.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
JB166664.1	ncRNA:21   GACUACCUAAGAAACGGCUCA   1   ||||*|||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGU   21 Target Full Sequence	1.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:21   GACUACCUAAGAAACGGCUCA   1   ||||*|||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGU   21 Target Full Sequence	1.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   GGCG-ACUACCUAAGAAACGGCUCA   1   |||*-||*|||*||||||||||||| targets:42   CCGAGUGUUGGCUUCUUUGCCGAGU   66 Target Full Sequence	2.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   GGCGACUACCUAAGAAACGGCUCA   1   *=|**||||||*|||||||||||| targets:9   AUGGAGAUGGAGUCUUUGCCGAGU   32 Target Full Sequence	1.5	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   GGCGACUACCUAAGAAACGGCUCA   1   *=|**||||||*|||||||||||| targets:9   AUGGAGAUGGAGUCUUUGCCGAGU   32 Target Full Sequence	1.5	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   GGCGACUACCUAAGAAACGGCUCA   1   *=|**||||||*|||||||||||| targets:9   AUGGAGAUGGAGUCUUUGCCGAGU   32 Target Full Sequence	1.5	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   GGCG-ACUACCUAAGAAACGGCUCA   1   |||*-||*|||*||||||||||||| targets:1141   CCGAGUGUUGGCUUCUUUGCCGAGU   1165 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   GGCG-ACUACCUAAGAAACGGCUCA   1   |||*-||*|||*||||||||||||| targets:1278   CCGAGUGUUGGCUUCUUUGCCGAGU   1302 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   GGCG-ACUACCUAAGAAACGGCUCA   1   |||*-||*|||*||||||||||||| targets:1278   CCGAGUGUUGGCUUCUUUGCCGAGU   1302 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:24   GGCGACUACCUAAGAAACGGCUCA   1   ==|**|||||*|||||||=||||| targets:3917   UUGGAGAUGGCUUCUUUGUCGAGU   3940 Target Full Sequence	2.5	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget