| ncRNA ID | osa-miR5153 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr5:2518353-2518558 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 171 - UGGAUUCCACUGACACGUAGACGU - 194 |
| Stem-loop(if miRNA) |
---- A AG A U CU C UC GA --UAU AA CUACCUUAUAAUUUUUA CCACG U UGU UACGUGUUAGU GGA CACGUG UAG ACAUA AUAAAA AAUUAGAAA CAUAUUUUCUCCUCU U ||||| | ||| ||||||||||| ||| |||||| ||| ||||| |||||| ||||||||| ||||||||||||||| GGUGC A GCA AUGCACAGUCA CUU GUGUAC GUU UGUAU UAUUUU UUAAUUUUU GUAUAAAAGAGGAGA C UUAC C CU G C AG A -- -A UAAUU -G AUCCAUCUGUCUUUUUU |
| Stem-loop sequence | CCACGAUAGUGUAUACGUGUUAGUUGGACUCACGUGCUAGUCACAUAGAAUAAAAUAUAAUUAGAAAAACAUAUUUUCUCCUCUCUACCUUAUAAUUUUUAUCUUUUUUCUGUCUACCUAAGAGGAGAAAAUAUGGUUUUUAAUUUUAAUUUUUAUAUAUGUUUGACAUGUGGAUUCCACUGACACGUAGACGUCACCGUGGCAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK243017.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J090098N17, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| JB164655.1 |
|
1.0 | Sequence 2319 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
| HI404194.1 |
|
1.0 | Sequence 2319 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
| LQ236324.1 |
|
1.0 | Sequence 2319 from Patent EP2985353 | NA | coding protein | psRNATarget |
| 1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |