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BaseInfo

ncRNA ID	novel_zma_miR1449
Species	Zea mays
Class	miRNA
Genome position	Chr1:34841664-34841716 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089715
Length	24
Mature sequence(if miRNA)	1 - AAAUGAUUUCUAGUGACGGUUCCU - 24
Stem-loop(if miRNA)	--AA             A     CCU     AUGAUUUCUAGUG CGGUU   U     ||||||||||||| |||||   A     UGCUAAAGAUCAC GCCAA   A UUUA             C     AAG
Stem-loop sequence	AAAUGAUUUCUAGUGACGGUUCCUUAAGAAAACCGCCACUAGAAAUCGUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235156.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUAAA   1   |*||||||*||||||||||||||| targets:32   AAGAACCGCCACUAGAAAUCAUUU   55 Target Full Sequence	1.0	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUAAA   1   |*||||||*||||||||||||||| targets:32   AAGAACCGCCACUAGAAAUCAUUU   55 Target Full Sequence	1.0	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUAAA   1   |*||||||*||||||||||||||| targets:32   AAGAACCGCCACUAGAAAUCAUUU   55 Target Full Sequence	1.0	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUA-AA   1   =**|||||||||||||||||||-|| targets:14   GAAAACCGUCACUAGAAAUCAUAUU   38 Target Full Sequence	3.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUA-AA   1   =**|||||||||||||||||||-|| targets:14   GAAAACCGUCACUAGAAAUCAUAUU   38 Target Full Sequence	3.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUA-AA   1   =**|||||||||||||||||||-|| targets:14   GAAAACCGUCACUAGAAAUCAUAUU   38 Target Full Sequence	3.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
BT067267.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUAAA   1   |||*=||*||||||||=||||||| targets:661   AGGUGCCAUCACUAGAGAUCAUUU   684 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348N20 mRNA, complete cds	NA	coding protein	psRNATarget
EU962716.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUAAA   1   |||*=||*||||||||=||||||| targets:683   AGGUGCCAUCACUAGAGAUCAUUU   706 Target Full Sequence	2.5	Zea mays clone 244926 dnaJ domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155809.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUAAA   1   |||*=||*||||||||=||||||| targets:683   AGGUGCCAUCACUAGAGAUCAUUU   706 Target Full Sequence	2.5	Zea mays dnaJ domain containing protein (LOC100282903), mRNA	NA	coding protein	psRNATarget
EU953153.1	ncRNA:24   UCCUUGGCAGUGAUCUUUAGUAAA   1   |||*=||*||||||||=||||||| targets:729   AGGUGCCAUCACUAGAGAUCAUUU   752 Target Full Sequence	2.5	Zea mays clone 1386962 mRNA sequence	NA	coding protein	psRNATarget