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BaseInfo

ncRNA ID	novel_zma_miR1444
Species	Zea mays
Class	miRNA
Genome position	Chr1:269985086-269985241 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	133 - AUAAGUUGGAUUAUGGUGGAAGGG - 156
Stem-loop(if miRNA)	--               G     G    A             C       GAC      U                G G   AUAAGUUGGAUUAUG UGGAA GGUA GAGAGUAAAAUAU ACUUUGA   UAUAAA AAGCUAAAAUAAGCUA U U   ||||||||||||||| ||||| |||| ||||||||||||| |||||||   |||||| |||||||||||||||| |   UAUUCAACCUAAUAC ACUUU UCAU CUCUCAUUUUAUA UGGAACU   GUGUUU UUCGAUUUUAUUCGGU G U UA               G     A    C             A       --A      U                G G
Stem-loop sequence	AUAAGUUGGAUUAUGGUGGAAGGGUAAGAGAGUAAAAUAUCACUUUGAGACUAUAAAUAAGCUAAAAUAAGCUAGUGUUGGGUGGCUUAUUUUAGCUUUUUUGUGAUCAAGGUAAUAUUUUACUCUCCUACUAUUUCAGCAUAAUCCAACUUAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU975471.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   |=|||=|||||||||||||||||| targets:806   CUCUUUCACCAUAAUCCAACUUAU   829 Target Full Sequence	1.0	Zea mays clone 490696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036602.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   |||||*|||||||||||||||||| targets:1073   CCCUUACACCAUAAUCCAACUUAU   1096 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139196.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   |||||*|||||||||||||||||| targets:1073   CCCUUACACCAUAAUCCAACUUAU   1096 Target Full Sequence	1.0	Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA	NA	coding protein	psRNATarget
BT084593.2	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   |=||||||||=||||||||=|||| targets:10   CUCUUCCACCGUAAUCCAAUUUAU   33 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138P10 mRNA, complete cds	NA	coding protein	psRNATarget
BT054221.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   ||=|||||||||||*||||||||| targets:1010   CCUUUCCACCAUAACCCAACUUAU   1033 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0178P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152434.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   ||=|||||||||||*||||||||| targets:1010   CCUUUCCACCAUAACCCAACUUAU   1033 Target Full Sequence	1.5	Zea mays FIP1 (LOC100279424), mRNA	NA	coding protein	psRNATarget
XM_020541956.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   =|=|||||==|||||||||||||| targets:660   UCUUUCCAUUAUAAUCCAACUUAU   683 Target Full Sequence	2.0	PREDICTED: Zea mays U-box domain-containing protein 33-like (LOC109941340), mRNA	NA	coding protein	psRNATarget
EU956753.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   *=|||=|||||||||=|||||||| targets:2442   AUCUUUCACCAUAAUUCAACUUAU   2465 Target Full Sequence	2.5	Zea mays clone 1572652 cytochrome P450 CYP97A16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001319711.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   *=|||=|||||||||=|||||||| targets:2442   AUCUUUCACCAUAAUUCAACUUAU   2465 Target Full Sequence	2.5	Zea mays protein LUTEIN DEFICIENT 5, chloroplastic (LOC103627895), mRNA	NA	coding protein	psRNATarget
XM_008645727.2	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   *|*||=||||||||||||=||||| targets:3870   ACAUUUCACCAUAAUCCAGCUUAU   3893 Target Full Sequence	2.5	PREDICTED: Zea mays Translocase of chloroplast 159 chloroplastic (LOC100381654), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001174540.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   *=***==|=||||||||||||||| targets:2039   AUAAGUUAUCAUAAUCCAACUUAU   2062 Target Full Sequence	3.0	Zea mays putative sphingolipid transporter spinster homolog 2 (LOC100381734), mRNA	NA	coding protein	psRNATarget
BT062131.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   *=***==|=||||||||||||||| targets:2039   AUAAGUUAUCAUAAUCCAACUUAU   2062 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0217D24 mRNA, complete cds	NA	coding protein	psRNATarget
EU948770.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   *=***==|=||||||||||||||| targets:809   AUAAGUUAUCAUAAUCCAACUUAU   832 Target Full Sequence	3.0	Zea mays clone 384422 mRNA sequence	NA	coding protein	psRNATarget
AY107822.1	ncRNA:24   GGGAAGGUGGUAUUAGGUUGAAUA   1   *=***==|=||||||||||||||| targets:294   AUAAGUUAUCAUAAUCCAACUUAU   317 Target Full Sequence	3.0	Zea mays PCO087182 mRNA sequence	NA	coding protein	psRNATarget