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BaseInfo

ncRNA ID	novel_zma_miR1441
Species	Zea mays
Class	miRNA
Genome position	Chr1:292992341-292992443 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089712;SRR2089713
Length	21
Mature sequence(if miRNA)	83 - UUUGGUGGAUAGAGAAAUGGA - 103
Stem-loop(if miRNA)	--         --UA     A    A  A         ---AA     G   UG   UUUGGUGGA    GAGAA UGGA GU AUCCAUGGA     GAUGG AAG  A   |||||||||    ||||| |||| || |||||||||     ||||| |||  U   AAACCACCU    CUCUU AUCU CA UAGGUAUCU     UUAUC UUC  U CU         UGUC     -    A  C         CAAAC     G   UC
Stem-loop sequence	UUUGGUGGAUAGAGAAAUGGAAGUAAUCCAUGGAAAGAUGGGAAGUGAUUCUCUUGCUAUUCAAACUCUAUGGAUCACAUCUAUUCUCCUGUUCCACCAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY111712.1	ncRNA:21   AGGUAAAGAGAUAGGUGGUUU   1   *|||||||||||||||=|||= targets:210   ACCAUUUCUCUAUCCAUCAAG   230 Target Full Sequence	2.5	Zea mays CL23489_-2 mRNA sequence	NA	coding protein	psRNATarget
NM_001146901.1	ncRNA:21   AGGUAAAGAGAUAGGUGGUUU   1   |||||||=*|||||||||||| targets:1229   UCCAUUUUCCUAUCCACCAAA   1249 Target Full Sequence	2.5	Zea mays UMP-CMP kinase 3 (LOC100272426), mRNA	NA	coding protein	psRNATarget
BT038688.1	ncRNA:21   AGGUAAAGAGAUAGGUGGUUU   1   |||||||=*|||||||||||| targets:1229   UCCAUUUUCCUAUCCACCAAA   1249 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0309H03 mRNA, complete cds	NA	coding protein	psRNATarget
BT038234.1	ncRNA:21   AGGUAAAGAGAUAGGUGGUUU   1   |||||||=*|||||||||||| targets:1104   UCCAUUUUCCUAUCCACCAAA   1124 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0220G01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018595.2	ncRNA:21   AGGUAAAGAGAUAGGUGGUUU   1   |||||||||*||||||||||* targets:192   UCCAUUUCUGUAUCCACCAAC   212 Target Full Sequence	2.5	Zea mays clone EL01N0447G11.d mRNA sequence	NA	coding protein	psRNATarget
NM_001111676.2	ncRNA:21   AGGUAAAGAGAUAGGUGGUUU   1   |=*|||||*|||||||||||| targets:8   UUAAUUUCACUAUCCACCAAA   28 Target Full Sequence	2.5	Zea mays histone acetyltransferase complex component102 (hxa102), mRNA	NA	coding protein	psRNATarget