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BaseInfo

ncRNA ID	novel_zma_miR1430
Species	Zea mays
Class	miRNA
Genome position	Chr2:29145188-29145267 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AAUAGAAAUCUCUUAUAAAAAUAG - 24
Stem-loop(if miRNA)	--      CCG   -             C   ----    AUU   AUUUUU   AAG GGUUUUUAUUUUC CAA    AAAU   A   ||||||   ||| ||||||||||||| |||    ||||   UAAAAA   UUC CUAAAGAUAAAAG GUU    UUUG   G GA      -UA   U             A   CCAU    CUU
Stem-loop sequence	AUUUUUCCGAAGGGUUUUUAUUUUCCCAAAAAUAUUAGUUCGUUUUACCUUGAGAAAAUAGAAAUCUCUUAUAAAAAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008683270.2	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   =|||||||*||||=|||||||||| targets:1602   UUAUUUUUUUAAGGGAUUUCUAUU   1625 Target Full Sequence	2.5	PREDICTED: Zea mays LUC7 related protein (LOC100273852), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964317.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   =|||||||*||||=|||||||||| targets:1552   UUAUUUUUUUAAGGGAUUUCUAUU   1575 Target Full Sequence	2.5	Zea mays clone 277919 mRNA sequence	NA	coding protein	psRNATarget
NM_001148249.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   =|||||||*||||=|||||||||| targets:1471   UUAUUUUUUUAAGGGAUUUCUAUU   1494 Target Full Sequence	2.5	Zea mays LUC7 related protein (LOC100273852), mRNA	NA	coding protein	psRNATarget
BT041923.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   =|||||||*||||=|||||||||| targets:1471   UUAUUUUUUUAAGGGAUUUCUAUU   1494 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0081A09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ074480.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   =|||||||*||||=|||||||||| targets:188   UUAUUUUUUUAAGGGAUUUCUAUU   211 Target Full Sequence	2.5	TSA: Zea mays contig10117, mRNA sequence	NA	coding protein	psRNATarget
XM_020546935.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   |*||||||*||||||||||=|||| targets:1180   CCAUUUUUCUAAGAGAUUUUUAUU   1203 Target Full Sequence	2.5	PREDICTED: Zea mays Transmembrane ascorbate ferrireductase 1 (cl8731_1(323)), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143201.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   |*||||||*||||||||||=|||| targets:953   CCAUUUUUCUAAGAGAUUUUUAUU   976 Target Full Sequence	2.5	Zea mays Transmembrane ascorbate ferrireductase 1 (cl8731_1(323)), mRNA	NA	coding protein	psRNATarget
BT037372.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   |*||||||*||||||||||=|||| targets:953   CCAUUUUUCUAAGAGAUUUUUAUU   976 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0166L08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546938.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   |*||||||*||||||||||=|||| targets:1120   CCAUUUUUCUAAGAGAUUUUUAUU   1143 Target Full Sequence	2.5	PREDICTED: Zea mays Transmembrane ascorbate ferrireductase 1 (cl8731_1(323)), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546940.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   |*||||||*||||||||||=|||| targets:1094   CCAUUUUUCUAAGAGAUUUUUAUU   1117 Target Full Sequence	2.5	PREDICTED: Zea mays Transmembrane ascorbate ferrireductase 1 (cl8731_1(323)), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU972381.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   |*||||||*||||||||||=|||| targets:990   CCAUUUUUCUAAGAGAUUUUUAUU   1013 Target Full Sequence	2.5	Zea mays clone 380435 cytochrome b561 mRNA, complete cds	NA	coding protein	psRNATarget
EZ111364.1	ncRNA:24   GA-UAAAAAUA-UUCUCUAAAGAUAA   1   ||-||||||*|-|||||||||||||| targets:120   CUCAUUUUUUUCAAGAGAUUUCUAUU   145 Target Full Sequence	3.0	TSA: Zea mays contig47025, mRNA sequence	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   GAUAAAAAUAUUCUCUAAAGAUAA   1   =||||||***|||||||||||||| targets:2482   UUAUUUUCCGAAGAGAUUUCUAUU   2505 Target Full Sequence	3.0	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
HI406466.1	ncRNA:24   GAUAAAAAUA-UUCUCUAAAGAUAA   1   *****|||||-|||||||||||||| targets:17   ACCAAUUUAUCAAGAGAUUUCUAUU   41 Target Full Sequence	2.0	Sequence 4591 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238596.1	ncRNA:24   GAUAAAAAUA-UUCUCUAAAGAUAA   1   *****|||||-|||||||||||||| targets:17   ACCAAUUUAUCAAGAGAUUUCUAUU   41 Target Full Sequence	2.0	Sequence 4591 from Patent EP2985353	NA	coding protein	psRNATarget
JB166927.1	ncRNA:24   GAUAAAAAUA-UUCUCUAAAGAUAA   1   *****|||||-|||||||||||||| targets:17   ACCAAUUUAUCAAGAGAUUUCUAUU   41 Target Full Sequence	2.0	Sequence 4591 from Patent EP2559767	NA	coding protein	psRNATarget