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BaseInfo

ncRNA ID novel_zma_miR1425
Species Zea mays
Class miRNA
Genome position Chr1:2486329-2486385 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089712;SRR2089714;SRR2089715;SRR2089706;SRR2089707
Length 25
Mature sequence(if miRNA) 1 - AAAGGGCAUUUUCACUGGCGGGUUU - 25
Stem-loop(if miRNA) --              C      G    U
  AAAGGGCAUUUUCA UGGCGG UUUC U
  |||||||||||||| |||||| ||||
  UUUCCCGUAAAAGU ACCGCC AAGG A
CU              A      -    A
Stem-loop sequence AAAGGGCAUUUUCACUGGCGGGUUUCUUAAGGAACCGCCAAUGAAAAUGCCCUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001176701.1
ncRNA:25   UUUGGGCGGUCACUUUUACGGGAAA   1
  |||*||||||||||||||||*||||
targets:940   AAAACCGCCAGUGAAAAUGCACUUU   964

1.5 Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA NA coding protein psRNATarget
BT069194.2
ncRNA:25   UUUGGGCGGUCACUUUUACGGGAAA   1
  |||*||||||||||||||||*||||
targets:940   AAAACCGCCAGUGAAAAUGCACUUU   964

1.5 Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds NA coding protein psRNATarget