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BaseInfo

ncRNA ID	novel_zma_miR1422
Species	Zea mays
Class	miRNA
Genome position	Chr1:267690061-267690110 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287164;SRR2287165;SRR4237227;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866;SRR2089700;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	22
Mature sequence(if miRNA)	29 - GAGCUGGAGCUGGUACUGACUC - 50
Stem-loop(if miRNA)	--      CU   A     GA       GUCAGU  CGG UCCAG  UCUGC   ||||||  ||| |||||  ||||G   CAGUCA  GUC AGGUC  AGAUG CU      UG   G     -G
Stem-loop sequence	GUCAGUCUCGGAUCCAGGAUCUGCGGUAGAGCUGGAGCUGGUACUGACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU946446.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |||||||||||||||||||||= targets:274   GAGUCAGUACCAGCUCCAGCUU   295 Target Full Sequence	1.0	Zea mays clone 312505 mRNA sequence	NA	coding protein	psRNATarget
XM_020542933.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |||||||||||||||||||||= targets:811   GAGUCAGUACCAGCUCCAGCUU   832 Target Full Sequence	1.0	PREDICTED: Zea mays myosin tail region-interacting protein MTI1-like (LOC109941722), mRNA	NA	coding protein	psRNATarget
XM_020548978.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   ||||=||||||||||||||||= targets:292   GAGUUAGUACCAGCUCCAGCUU   313 Target Full Sequence	2.0	PREDICTED: Zea mays classical arabinogalactan protein 9-like (LOC109944276), mRNA	NA	coding protein	psRNATarget
XM_008672983.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   *||||||||||||||||||||= targets:301   AAGUCAGUACCAGCUCCAGCUU   322 Target Full Sequence	1.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103648534), mRNA	NA	coding protein	psRNATarget
EU963742.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |||*|||||||*|||||||||| targets:122   GAGGCAGUACCUGCUCCAGCUC   143 Target Full Sequence	2.5	Zea mays clone 272312 peroxisomal membrane protein PMP22 mRNA, complete cds	NA	coding protein	psRNATarget
EU976044.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |||*|||||||*|||||||||| targets:234   GAGCCAGUACCUGCUCCAGCUC   255 Target Full Sequence	2.5	Zea mays clone 509517 peroxisomal membrane protein PMP22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001159075.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |||*|||||||*|||||||||| targets:234   GAGCCAGUACCUGCUCCAGCUC   255 Target Full Sequence	2.5	Zea mays peroxisomal membrane protein PMP22 (LOC100286187), mRNA	NA	coding protein	psRNATarget
XM_020553425.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |||*|||||||*|||||||||| targets:364   GAGGCAGUACCUGCUCCAGCUC   385 Target Full Sequence	2.5	PREDICTED: Zea mays peroxisomal membrane protein PMP22 (LOC100286187), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645654.2	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |||*|||||||*|||||||||| targets:370   GAGGCAGUACCUGCUCCAGCUC   391 Target Full Sequence	2.5	PREDICTED: Zea mays peroxisomal membrane protein PMP22 (LOC100286187), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KJ727554.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |=|*|=|*|||||||||||||| targets:9   GGGCCGGCACCAGCUCCAGCUC   30 Target Full Sequence	3.0	Zea mays clone pUT5414 AP2-EREBP transcription factor (EREB36) mRNA, partial cds	NA	coding protein	psRNATarget
BT038855.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |=|*|=|*|||||||||||||| targets:82   GGGCCGGCACCAGCUCCAGCUC   103 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0336G21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146976.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |=|*|=|*|||||||||||||| targets:82   GGGCCGGCACCAGCUCCAGCUC   103 Target Full Sequence	3.0	Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB36), mRNA	NA	coding protein	psRNATarget
EU974331.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |*|||||**||||||||||||| targets:1200   GCGUCAGCUCCAGCUCCAGCUC   1221 Target Full Sequence	2.0	Zea mays clone 446329 mRNA sequence	NA	coding protein	psRNATarget
XM_008672360.2	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |*|||||**||||||||||||| targets:3203   GCGUCAGCUCCAGCUCCAGCUC   3224 Target Full Sequence	2.0	PREDICTED: Zea mays F-box only protein 13 (LOC103647857), mRNA	NA	coding protein	psRNATarget
DQ244814.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   **|*||||*||||||||||||| targets:261   CCGGCAGUUCCAGCUCCAGCUC   282 Target Full Sequence	2.0	Zea mays clone 10976 mRNA sequence	NA	coding protein	psRNATarget
EU966442.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |***||||*||||||||||||| targets:392   GCACCAGUUCCAGCUCCAGCUC   413 Target Full Sequence	2.0	Zea mays clone 294568 dehydrin COR410 mRNA, complete cds	NA	coding protein	psRNATarget
BT066558.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |***||||*||||||||||||| targets:373   GCACCAGUUCCAGCUCCAGCUC   394 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0022N20 mRNA, complete cds	NA	coding protein	psRNATarget
BT043209.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |***||||*||||||||||||| targets:377   GCACCAGUUCCAGCUCCAGCUC   398 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0121D02 mRNA, complete cds	NA	coding protein	psRNATarget
EU955536.1	ncRNA:22   CUCAGUCAUGGUCGAGGUCGAG   1   |***||||*||||||||||||| targets:381   GCACCAGUUCCAGCUCCAGCUC   402 Target Full Sequence	2.0	Zea mays clone 1535959 dehydrin COR410 mRNA, complete cds	NA	coding protein	psRNATarget