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BaseInfo

ncRNA ID	novel_zma_miR1409
Species	Zea mays
Class	miRNA
Genome position	Chr1:18382931-18382979 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR4237222;SRR2089700
Length	24
Mature sequence(if miRNA)	1 - ACCAGGCCGCGGACUGUCCGGCCC - 24
Stem-loop(if miRNA)	AC    CC           --       CAGG  GCGGACUGUCC  GGCCC   ||||  |||||||||||  ||||C   GUUC  CGCCUGACAGG  CCGGA -C    -C           CG
Stem-loop sequence	ACCAGGCCGCGGACUGUCCGGCCCCAGGCCGCGGACAGUCCGCCCUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970066.1	ncRNA:24   CCCGGCCUGUCAGGCGCCGGACCA   1   |||||||||=|||||||||||||| targets:854   GGGCCGGACGGUCCGCGGCCUGGU   877 Target Full Sequence	1.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU970066.1	ncRNA:24   CCCGGCCUGUCAGGCGCCGGACCA   1   |||||||||=|||||||||||||| targets:927   GGGCCGGACGGUCCGCGGCCUGGU   950 Target Full Sequence	1.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CCCGGCCUGUCAGGCGCCGGACCA   1   |||||||||=|||||||*|||||| targets:720   GGGCCGGACGGUCCGCGACCUGGU   743 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   CCCG-GCCUGUCAGGCGCCGGACCA   1   *|||-|||||=|||||||||||||* targets:1346   AGGCACGGACGGUCCGCGGCCUGGG   1370 Target Full Sequence	2.0	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   CCCG-GCCUGUCAGGCGCCGGACCA   1   *|||-|||||=|||||||||||||* targets:1428   AGGCACGGACGGUCCGCGGCCUGGG   1452 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget