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BaseInfo

ncRNA ID	novel_zma_miR1408
Species	Zea mays
Class	miRNA
Genome position	Chr9:119045948-119046064 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR2089698;SRR2089703
Length	24
Mature sequence(if miRNA)	94 - AAAUGAAAUAAAGUGGAGGGACUA - 117
Stem-loop(if miRNA)	--       A        C         C C      AC      UA          C   GUUCCUC AUUUUAUU CAUUUUAGU C UAAAUU  UAAAUA  GAAACUAAAA U   ||||||| |||||||| ||||||||| | ||||||  ||||||  |||||||||| C   CAGGGAG UGAAAUAA GUAAAAUCA G AUUUAA  AUUUAU  CUUUGAUUUU U AU       G        A         A U      CA      CC          A
Stem-loop sequence	GUUCCUCAAUUUUAUUCCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCCUAUUUAACAAUUUAUGAACUAAAAUGAAAUAAAGUGGAGGGACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967664.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   |||||=||||||||||||*||||| targets:1125   UAGUCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   |||||=||||||||||||*||||| targets:1125   UAGUCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*||=|||||||||||| targets:30   UAGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*||=|||||||||||| targets:30   UAGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*||=|||||||||||| targets:30   UAGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||-||||||||=|||||||||||| targets:2886   UA-UCCCUCCAUUUUAUUUCAUUU   2908 Target Full Sequence	1.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||-||||||||=|||||||||||| targets:887   UA-UCCCUCCAUUUUAUUUCAUUU   909 Target Full Sequence	1.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||-||||||||=|||||||||||| targets:887   UA-UCCCUCCAUUUUAUUUCAUUU   909 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*|||||||||*||||| targets:28   UAGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*|||||||||*||||| targets:28   UAGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*|||||||||*||||| targets:28   UAGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget