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BaseInfo

ncRNA ID	novel_zma_miR1402
Species	Zea mays
Class	miRNA
Genome position	Chr1:212052454-212052572 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	96 - AAAGAAAUAAAAUGAAGGGACUAA - 119
Stem-loop(if miRNA)	--     G A         C A     AUUCCA               A         C   AGUCC U CAUUUUAUU C UUUUA      AAAUUGCUAAAUAUA AAACUAAAA U   ||||| | ||||||||| | |||||      ||||||||||||||| ||||||||| U   UCAGG A GUAAAAUAA G AAAAU      UUUAACGAUUUAUAU UUUGAUUUU U AA     G A         A A     CAUAUA               C         A
Stem-loop sequence	AGUCCGUACAUUUUAUUCCAUUUUAAUUCCAAAAUUGCUAAAUAUAAAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCAAUUUAUAUACUAAAAAGAAAUAAAAUGAAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008656457.2	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:1670   UUAGUCCCUUCAUUUUAUUCCUUU   1693 Target Full Sequence	1.5	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:1267   UUAGUCCCUUCAUUUUAUUCCUUU   1290 Target Full Sequence	1.5	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:1180   UUAGUCCCUUCAUUUUAUUCCUUU   1203 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:1174   UUAGUCCCUUCAUUUUAUUCCUUU   1197 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:1171   UUAGUCCCUUCAUUUUAUUCCUUU   1194 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:1162   UUAGUCCCUUCAUUUUAUUCCUUU   1185 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:490   UUAGUCCCUUCAUUUUAUUCCUUU   513 Target Full Sequence	1.5	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
JB167682.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:7   UUAGUCCCUUCAUUUUAUUCCUUU   30 Target Full Sequence	1.5	Sequence 5346 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239351.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:7   UUAGUCCCUUCAUUUUAUUCCUUU   30 Target Full Sequence	1.5	Sequence 5346 from Patent EP2985353	NA	coding protein	psRNATarget
HI407221.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   |||||||||||||||||||*|||| targets:7   UUAGUCCCUUCAUUUUAUUCCUUU   30 Target Full Sequence	1.5	Sequence 5346 from Patent EP2074227	NA	coding protein	psRNATarget
EU955757.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   ***|||||||||||||*||||||* targets:1288   GCUGUCCCUUCAUUUUUUUUCUUC   1311 Target Full Sequence	2.5	Zea mays clone 1544923 EF hand family protein mRNA, complete cds	NA	coding protein	psRNATarget
EU976533.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   ***|||||||||||||*||||||* targets:752   GCUGUCCCUUCAUUUUUUUUCUUC   775 Target Full Sequence	2.5	Zea mays clone 896880 EF hand family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001159164.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   ***|||||||||||||*||||||* targets:752   GCUGUCCCUUCAUUUUUUUUCUUC   775 Target Full Sequence	2.5	Zea mays EF hand family protein (LOC100286277), mRNA	NA	coding protein	psRNATarget
NM_001154037.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   ***|||||||||||||*||||||* targets:739   GCUGUCCCUUCAUUUUUUUUCUUC   762 Target Full Sequence	2.5	Zea mays EF hand family protein (LOC100281118), mRNA	NA	coding protein	psRNATarget
EU955643.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   ***|||||||||||||*||||||* targets:739   GCUGUCCCUUCAUUUUUUUUCUUC   762 Target Full Sequence	2.5	Zea mays clone 1540502 EF hand family protein mRNA, complete cds	NA	coding protein	psRNATarget
EU954406.1	ncRNA:24   AAUCAGGGAAGUAAAAUAAAGAAA   1   ***|||||||||||||*||||||* targets:393   GCUGUCCCUUCAUUUUUUUUCUUC   416 Target Full Sequence	2.5	Zea mays clone 1466145 mRNA sequence	NA	coding protein	psRNATarget