Search result

BaseInfo

ncRNA ID	novel_zma_miR1401
Species	Zea mays
Class	miRNA
Genome position	Chr9:66563883-66563939 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089700
Length	24
Mature sequence(if miRNA)	1 - AAACUUUCGACGGGAUGGCUUAAC - 24
Stem-loop(if miRNA)	--         AC   A     U     C   AAACUUUCG  GGG UGGCU AACUU C   |||||||||  ||| ||||| |||||   UUUGAGAGC  UUC AUCGA UUGAG G GA         -C   A     U     A
Stem-loop sequence	AAACUUUCGACGGGAUGGCUUAACUUCCGAGAGUUUAGCUAACUUCCGAGAGUUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020553436.1	ncRNA:24   CAAUUCGGUAGGGCAGCUUUCAAA   1   ||*||||||||||||||=|||||| targets:1669   GUGAAGCCAUCCCGUCGGAAGUUU   1692 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT062217.1	ncRNA:24   CAAUUCGGUAGGGCAGCUUUCAAA   1   ||*||||||||||||||=|||||| targets:1539   GUGAAGCCAUCCCGUCGGAAGUUU   1562 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0228H22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682719.2	ncRNA:24   CAAUUCGGUAGGGCAGCUUUCAAA   1   ||*||||||||||||||=|||||| targets:1669   GUGAAGCCAUCCCGUCGGAAGUUU   1692 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553435.1	ncRNA:24   CAAUUCGGUAGGGCAGCUUUCAAA   1   ||*||||||||||||||=|||||| targets:4429   GUGAAGCCAUCCCGUCGGAAGUUU   4452 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X2, mRNA	NA	coding protein	psRNATarget