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BaseInfo

ncRNA ID	osa-miR396e-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:34436820-34437003 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	152 - AUGGUUCAAGAAAGCCCAUGGAAA - 175
Stem-loop(if miRNA)	G    C      CA                G   UC      GU ----    UGCUCAUGUUGGGAUUGUGGUCGGUGGCCUCCAAUU GCGG CAUG UUUCCA  GGCUUUCUUGAACUGU AAC  GUGGGG  G    UAUG                                    C |||| |||| ||||||  |||||||||||||||| |||  ||||||  |    ||||                                    U CGCC GUAC AAAGGU  CCGAAAGAACUUGGUA UUG  CAUCUC  C    UUCU                                    C     -    C      AC                G   UC      UG UGGU    GUCUUGCCCCUCGAGCUGUUAAGUCGAAAGAAAAGU
Stem-loop sequence	GCGGGCAUGCUUUCCACAGGCUUUCUUGAACUGUGAACUCGUGGGGGUGUAUGUGCUCAUGUUGGGAUUGUGGUCGGUGGCCUCCAAUUCUCUGAAAAGAAAGCUGAAUUGUCGAGCUCCCCGUUCUGUCUUUGGUCGUCUCUACCUGUUGAUGGUUCAAGAAAGCCCAUGGAAACCAUGCCGC

Reference

1	PMID:15805478 "Cloning and characterization of microRNAs from rice"; Sunkar R, Girke T, Jain PK, Zhu JK; Plant Cell. 17:1397-1411(2005).
2	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).