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BaseInfo

ncRNA ID novel_zma_miR1397
Species Zea mays
Class miRNA
Genome position Chr9:53479232-53479335 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089713;SRR2089714;SRR2287031;SRR2287162;SRR2287165;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - AAUAGGAUGUUUCCACUGACGGUU - 24
Stem-loop(if miRNA) --                  A         UAAGA   C            U
  AAUAGGAUGUUUCCACUG CGGUUGUGU     UAA CGCCAGUGGAAA C
  |||||||||||||||||| |||||||||     ||| ||||||||||||
  UUAUCCUACAAAGGUGAC GCCAACACA     GUU GCGGUCACUUUU A
CU                  C         UUGUG   A            A
Stem-loop sequence AAUAGGAUGUUUCCACUGACGGUUGUGUUAAGAUAACCGCCAGUGGAAAUCAAUUUUCACUGGCGAUUGGUGUUACACAACCGCCAGUGGAAACAUCCUAUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ101180.1
ncRNA:24   UUGGCAGUCACCUUUGUAGGAUAA   1
  |||||*|||||||||=||||||||
targets:81   AACCGCCAGUGGAAAUAUCCUAUU   104

2.5 TSA: Zea mays contig36836, mRNA sequence NA coding protein psRNATarget