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BaseInfo

ncRNA ID	novel_zma_miR1396
Species	Zea mays
Class	miRNA
Genome position	Chr10:114702901-114702998 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	75 - AUCAUAUACUCCCUCCGUUUCUUU - 98
Stem-loop(if miRNA)	--AU                   U                     U  A     CAUAUACUCCCUCCGUUUC UUUUAGUUGUCGCUGGAUAGU CA U     ||||||||||||||||||| ||||||||||||||||||||| ||     GUGUAUGAGGGAGGCAAAG AAAAUCAACAGCGACCUAUCA GU U CUUU                   C                     C  U
Stem-loop sequence	AUCAUAUACUCCCUCCGUUUCUUUUUAGUUGUCGCUGGAUAGUUCAAUUUUGCACUAUCCAGCGACAACUAAAACGAAACGGAGGGAGUAUGUGUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945792.1	ncRNA:24   UUUCUUUGCCUCCCUCAUAUACUA   1   ||||||||||||||||||||||*| targets:1252   AAAGAAACGGAGGGAGUAUAUGCU   1275 Target Full Sequence	1.5	Zea mays clone 285684 mRNA sequence	NA	coding protein	psRNATarget
XM_008656230.2	ncRNA:24   UUUCUUUGCCUCCCUCAUAUACUA   1   ||||||||||||||||||||||*| targets:53   AAAGAAACGGAGGGAGUAUAUGCU   76 Target Full Sequence	1.5	PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA	NA	coding protein	psRNATarget
EU964554.1	ncRNA:24   UUUCUUUGCCUCCCUCAUAUACUA   1   ||||||||||||||||||||||*| targets:1401   AAAGAAACGGAGGGAGUAUAUGCU   1424 Target Full Sequence	1.5	Zea mays clone 279840 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU957018.1	ncRNA:24   UUUCUUUGCCUCCCUCAUAUACUA   1   ||||||||||||||||||*||||* targets:2066   AAAGAAACGGAGGGAGUACAUGAA   2089 Target Full Sequence	2.5	Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds	NA	coding protein	psRNATarget
EU952378.1	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-|||||||||||||||*||||| targets:778   AAACGAAACGGAGGGAGUACAUGAU   802 Target Full Sequence	1.5	Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
BT068381.1	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1174   AAACGAAACGGAGGGAGUAUAUCAU   1198 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds	NA	coding protein	psRNATarget
EU956063.1	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1127   AAACGAAACGGAGGGAGUAUAUCAU   1151 Target Full Sequence	1.5	Zea mays clone 1556707 mRNA sequence	NA	coding protein	psRNATarget
EU973028.1	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1233   AAACGAAACGGAGGGAGUAUAUCAU   1257 Target Full Sequence	1.5	Zea mays clone 391970 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT088158.1	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1267   AAACGAAACGGAGGGAGUAUAUCAU   1291 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656167.2	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1286   AAACGAAACGGAGGGAGUAUAUCAU   1310 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT035950.1	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1467   AAACGAAACGGAGGGAGUAUAUCAU   1491 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138729.1	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1467   AAACGAAACGGAGGGAGUAUAUCAU   1491 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA	NA	coding protein	psRNATarget
XM_008656166.2	ncRNA:24   UUU-CUUUGCCUCCCUCAUAUACUA   1   |||-||||||||||||||||||*|| targets:1331   AAACGAAACGGAGGGAGUAUAUCAU   1355 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA	NA	coding protein	psRNATarget