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BaseInfo

ncRNA ID	novel_zma_miR1391
Species	Zea mays
Class	miRNA
Genome position	Chr9:39923928-39924013 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287163;SRR3341856;SRR2089700;SRR2089702;SRR2089703
Length	21
Mature sequence(if miRNA)	1 - AUUGAAGAGGAUUGGAGGGGA - 21
Stem-loop(if miRNA)	--   GA  A      G   -              G   G   A   AUU  AG GGAUUG AGG GGAUUAAAUCCCUU CUA UCA A   |||  || |||||| ||| |||||||||||||| ||| |||   UAG  UC CCUAAC UCC CCUAAUUUAGGGGA GAU AGU A CC   UC  C      -   A              G   A   U
Stem-loop sequence	AUUGAAGAGGAUUGGAGGGGAUUAAAUCCCUUGCUAGUCAAAAUUGAAUAGGAGGGGAUUUAAUCCACCUCAAUCCCCUCUGAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ069159.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   |||=|||||||||*||||||| targets:58   UCCUCUCCAAUCCCCUUCAAU   78 Target Full Sequence	2.5	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   ||=||||||||*||||||||| targets:193   UCUCCUCCAAUACUCUUCAAU   213 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   ||=||||||||*||||||||| targets:183   UCUCCUCCAAUACUCUUCAAU   203 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
BT084925.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:372   UUCGCUCCAUUCCUCUUCAAU   392 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207G04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196032.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:372   UUCGCUCCAUUCCUCUUCAAU   392 Target Full Sequence	2.5	Zea mays uncharacterized LOC100501270 (LOC100501270), mRNA	NA	coding protein	psRNATarget
EU949726.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:582   UUCGCUCCAUUCCUCUUCAAU   602 Target Full Sequence	2.5	Zea mays clone 442532 mRNA sequence	NA	coding protein	psRNATarget
XM_020539146.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:5289   UUCGCUCCAUUCCUCUUCAAU   5309 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539145.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:5396   UUCGCUCCAUUCCUCUUCAAU   5416 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY110615.1	ncRNA:21   AGGGGAGGUUAGGAGAAGUUA   1   |=|*||=*||||||||||||| targets:340   UUCACUUGAAUCCUCUUCAAU   360 Target Full Sequence	3.0	Zea mays CL44168_1 mRNA sequence	NA	coding protein	psRNATarget