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BaseInfo

ncRNA ID novel_zma_miR1388
Species Zea mays
Class miRNA
Genome position Chr9:1567231-1567280 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR1997865;SRR1997866;SRR2089706;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - CAUCGGACUGUCCGGUGCCCACAC - 24
Stem-loop(if miRNA) --    A         U        
  GUGG GCAUCGGAC GUCUGGUGG
  |||| ||||||||| ||||||||C
  CACC CGUGGCCUG CAGGCUACA
CA    -         U        
Stem-loop sequence GUGGAGCAUCGGACUGUCUGGUGGCACAUCGGACUGUCCGGUGCCCACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT038885.1
ncRNA:24   CACACCCGUGGCCUGUCAGGCUAC   1
  **|**|||=||||||||||||=||
targets:860   CGGGAGGCGCCGGACAGUCCGGUG   883

2.5 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   CACACCCGUGGCCUGUCAGGCUAC   1
  **|**|||=||||||||||||=||
targets:1231   CGGGAGGCGCCGGACAGUCCGGUG   1254

2.5 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget