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BaseInfo

ncRNA ID novel_zma_miR1384
Species Zea mays
Class miRNA
Genome position Chr9:12080517-12080581 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287031;SRR2287162;SRR2287163;SRR2287165;SRR2089700;SRR2089703;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 42 - AUGUGUUGAGGUGGAUUAUGGUGU - 65
Stem-loop(if miRNA) --A                A        A  AG
   UGUGUUGAGGUGGAUU UGGUGUAA CU  U
   |||||||||||||||| |||||||| ||
   ACAUAACUCCACCUAA ACCACAUU GA  U
UAA                C        -  AU
Stem-loop sequence AUGUGUUGAGGUGGAUUAUGGUGUAAACUAGUUUAAGUUACACCACAAUCCACCUCAAUACAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402966.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||||||||||||||||||=||||
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

1.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||||||||||||||||||=||||
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

1.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
JB163427.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||||||||||||||||||=||||
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

1.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
JB163809.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||=|||||=|||||||||||||
targets:62   ACACUAUAAUUCACCUCAACACAU   85

1.0 Sequence 1473 from Patent EP2559767 NA coding protein psRNATarget
HI403348.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||=|||||=|||||||||||||
targets:62   ACACUAUAAUUCACCUCAACACAU   85

1.0 Sequence 1473 from Patent EP2074227 NA coding protein psRNATarget
LQ235478.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||=|||||=|||||||||||||
targets:62   ACACUAUAAUUCACCUCAACACAU   85

1.0 Sequence 1473 from Patent EP2985353 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||||*|||||||||||||=||||
targets:53   ACACCCUAAUCCACCUCAAUACAU   76

2.5 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
HI402950.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||||*|||||||||||||=||||
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||||*|||||||||||||=||||
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
JB163411.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||||*|||||||||||||=||||
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
JB163953.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||=*|||||||||||||=||||
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.5 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
HI403492.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||=*|||||||||||||=||||
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.5 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||=*|||||||||||||=||||
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.5 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
AY110392.1
ncRNA:24   UGUGGUA-UUAGGUGGAGUUGUGUA   1
  |||||*|-|||||||||||||||||
targets:151   ACACCCUCAAUCCACCUCAACACAU   175

3.0 Zea mays CL7038_2 mRNA sequence NA coding protein psRNATarget
LQ235585.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||**||||||||||||||||||
targets:60   ACACAUUAAUCCACCUCAACACAU   83

1.0 Sequence 1580 from Patent EP2985353 NA coding protein psRNATarget
HI403455.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||**||||||||||||||||||
targets:60   ACACAUUAAUCCACCUCAACACAU   83

1.0 Sequence 1580 from Patent EP2074227 NA coding protein psRNATarget
JB163916.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  ||||**||||||||||||||||||
targets:60   ACACAUUAAUCCACCUCAACACAU   83

1.0 Sequence 1580 from Patent EP2559767 NA coding protein psRNATarget
XM_008672302.2
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |=|*||*|||||||||||||||||
targets:2495   AUAACACAAUCCACCUCAACACAU   2518

1.0 PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA NA coding protein psRNATarget
JB163724.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||=|**|||||||||||||||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.0 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||=|**|||||||||||||||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.0 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403262.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||=|**|||||||||||||||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.0 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||=|**|||||||||||||||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.0 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
HI403263.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||=|**|||||||||||||||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.0 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
JB163723.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||=|**|||||||||||||||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.0 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
HI403198.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||*|**|||||||||||||||||
targets:62   ACAACUCAAUCCACCUCAACACAU   85

2.0 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
LQ235328.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||*|**|||||||||||||||||
targets:62   ACAACUCAAUCCACCUCAACACAU   85

2.0 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
JB163659.1
ncRNA:24   UGUGGUAUUAGGUGGAGUUGUGUA   1
  |||*|**|||||||||||||||||
targets:62   ACAACUCAAUCCACCUCAACACAU   85

2.0 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
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