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BaseInfo

ncRNA ID	novel_zma_miR1383
Species	Zea mays
Class	miRNA
Genome position	Chr9:13429643-13429768 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR4237222;SRR5105961;SRR1997866;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AUCUGACAGAAACGAACAAGGCCU - 24
Stem-loop(if miRNA)	--             ACA        --CACC      C     -   UAAUCAAA    --A  U   GCCUUGUUCGUUU   UCGGAUUG      CGGAAU GUUCC AGC        GUUU   UA A   |||||||||||||   ||||||||      |||||| ||||| |||        ||||   || A   CGGAACAAGCAAA   AGUCUAAC      GCUUUG UAAGG UCG        CAAA   AU A UC             GAC        CAUCUA      C     A   --UCCUAA    GAG  U
Stem-loop sequence	GCCUUGUUCGUUUACAUCGGAUUGCACCCGGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAAUUAGAGAAACAAUCCUGCUAGGAAUCGUUUCGAUCUACCAAUCUGACAGAAACGAACAAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405923.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   ||||||||||||||||||||=||| targets:238   AGGCCUUGUUCGUUUCUGUCGGAU   261 Target Full Sequence	1.5	Sequence 4048 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238053.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   ||||||||||||||||||||=||| targets:238   AGGCCUUGUUCGUUUCUGUCGGAU   261 Target Full Sequence	1.5	Sequence 4048 from Patent EP2985353	NA	coding protein	psRNATarget
JB166384.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   ||||||||||||||||||||=||| targets:238   AGGCCUUGUUCGUUUCUGUCGGAU   261 Target Full Sequence	1.5	Sequence 4048 from Patent EP2559767	NA	coding protein	psRNATarget
EU941248.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   ||||||||||||||||||||=||| targets:114   AGGCCUUGUUCGUUUCUGUCGGAU   137 Target Full Sequence	1.5	Zea mays clone 1431203 mRNA sequence	NA	coding protein	psRNATarget
EU965080.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   ||||||||||||||||||||=||| targets:1536   AGGCCUUGUUCGUUUCUGUCGGAU   1559 Target Full Sequence	1.5	Zea mays clone 283644 mRNA sequence	NA	coding protein	psRNATarget
XM_020540976.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   ||||||||||||||||||||=||| targets:4412   AGGCCUUGUUCGUUUCUGUCGGAU   4435 Target Full Sequence	1.5	PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ239469.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   |||=||||||||||||||||=||| targets:9   AGGUCUUGUUCGUUUCUGUCGGAU   32 Target Full Sequence	1.5	Sequence 5464 from Patent EP2985353	NA	coding protein	psRNATarget
HI407339.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   |||=||||||||||||||||=||| targets:9   AGGUCUUGUUCGUUUCUGUCGGAU   32 Target Full Sequence	1.5	Sequence 5464 from Patent EP2074227	NA	coding protein	psRNATarget
JB167800.1	ncRNA:24   UCCGGAACAAGCAAAGACAGUCUA   1   |||=||||||||||||||||=||| targets:9   AGGUCUUGUUCGUUUCUGUCGGAU   32 Target Full Sequence	1.5	Sequence 5464 from Patent EP2559767	NA	coding protein	psRNATarget