| ncRNA ID | osa-miR5542 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:32797606-32797757 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 122 - UUUGAGAAGGUAUCAUGAGAU - 142 |
| Stem-loop(if miRNA) |
UUC G A UG A -AAAAAA G A A CAUA UACG UCUUUGAG AGGUAUCA AG UAC UUUA UGUAAA UUUAGUAUCUUAUG UACCU G |||| |||||||| |||||||| || ||| |||| |||||| |||||||||||||| ||||| AUGC AGGAACUC UCCAUAGU UC AUG AGAU ACAUUU AAAUCAUAGAAUAC AUGGA U AAA A C GU C GUAAAAA A - C UCCA |
| Stem-loop sequence | UUCUACGGUCUUUGAGAAGGUAUCAUGAGAUACAAAAAAUUUAGUGUAAAAUUUAGUAUCUUAUGAUACCUCAUAGUACCUAGGUACCAUAAGAUACUAAAUUUACAAUAGAAAAAAUGGUACCUUGUGAUACCUCCUCAAGGAACGUAAAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK101779.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J033064O20, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |